Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq16451 282 5e-71 seq6480 282 5e-71 seq5752 141 1e-28 >seq16451 Length=2876 Score = 282 bits (312), Expect = 5e-71 Identities = 772/1152 (67%), Gaps = 38/1152 (3%) Strand=Plus/Plus Query 62685 TCAAATGGATAATTTAAGAGAATAAAC-GCGTCCGCTAATCCTTGAACACCAATACCGAT 62743 ||||||||||| ||||||| |||| || || || || |||| |||||||||||| || Sbjct 1058 TCAAATGGATA-TTTAAGAAGTTAAAGAGCATCTGCAAAACCTTAAACACCAATACCAAT 1116 Query 62744 AGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTA 62802 ||||||||| | ||| || || || ||||||| || || ||||||||| |||| | Sbjct 1117 GGGTCTATGTTTAAGATTTGA-ATATCTTGCTTCTGAAACTGGGTAATAATTATTATCAA 1175 Query 62803 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62862 | || || || | ||| | |||| |||| ||||| | || || | | ||| Sbjct 1176 TTATCTTGTTTAAATTCTTAGTAATTCTTTTGGTAACATCATGCAACTTCTCATAGTCAT 1235 Query 62863 ATCGCCCA---TCTATT---ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGG 62916 || | ||| || |||||| |||| ||||| | || || |||||||| || | Sbjct 1236 ATTCTTTAGTTTCTGTTTTTACAAACCTGTTTAAGGCTATTGAGGCTAGATTACATACAG 1295 Query 62917 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAG 62976 |||| |||| | | ||||| || || ||||| || ||||| || || || Sbjct 1296 CTACTTCATCTGGGCTAGTATATTCTACAATTTCAGTACAGAGATTTGAACTTTTTATGC 1355 Query 62977 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63036 || | ||||||| |||| ||| ||||||| | ||| || || || || |||||| Sbjct 1356 ACCCCAGGTTTTGTTAATTAGATTTTCTGTTACAAGTATCTTTGTATAGCATATATGGAG 1415 Query 63037 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG 63096 | ||||| ||||| |||||||||| |||| |||| | || ||||||||| | Sbjct 1416 TTCCAGTCTCAATTTGAGATTCTACAATCTAGCTCCATAACCATCTAGCCTTTATAGTCT 1475 Query 63097 ATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 63156 | || ||| | ||| ||| ||| | ||| | | ||||| || |||||||| Sbjct 1476 TTCTGCCTCTTCCCTCTTCTTCATATTTTTCATAAAGTTTCTCGAATTCTTCTCCCCAG- 1534 Query 63157 CAT-TGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63215 ||| | ||| || || || |||| |||||||| | | ||| ||| |||| ||| Sbjct 1535 CATGTAGTCAAACCTGGGCACTCATTAGGACACATTAGAGTCCATTCT---TCATTCTTT 1591 Query 63216 ---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCT 63271 |||| ||||||||| ||||| || ||||| || || ||| ||||||||||||| ||| Sbjct 1592 TCGACTCTTTTCATAAAAAGATCTGGGATCCAGAGTGC-ATAGAATAGATCTCTGGCTCT 1650 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT-AATATCAGAATGCC 63330 || ||| || || || ||||||| |||| | ||||| | ||| |||||||| ||||| Sbjct 1651 ATTTTCTTCTTTGCCATGATTCTTTCTAAGTTAAAGGAA-GTCATAAATATCAGCATGCC 1709 Query 63331 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63390 | ||||| | || | || | |||| | || ||||| ||||| | || | Sbjct 1710 AAGGTTCTACATAGACAGCAAATGCTCCTTTTCTCTTTCCACCTCCTTGATCAACATACC 1769 Query 63391 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG-ATATACCATTGGTA 63449 |||| |||| |||| ||||| | | ||| |||| || ||||||| ||| ||| || || Sbjct 1770 TAGCAGTGTCATTAAAAACTTTAAGCATAGGAACAAGTCCGTTTGCATA-ACCGTTAGTT 1828 Query 63450 CCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63508 || |||| || || || || | |||| | ||||| || || || ||||| Sbjct 1829 CCTCTAATATAAGAATCTGCT-GCTCTTATATCTGAGACTGATACTCCAATGCCACCTGC 1887 Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568 || ||||| | || | || | || ||| ||||||| |||| ||| || Sbjct 1888 GGCCTTGGAGATAACAGCAATTTACTTGAGTGTTTCAAAGATACCTTCTACAGAATCTTC 1947 Query 63569 GATCAT-GTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAGTTCCCGCATTAAA 63625 |||| ||||| ||| ||||| | ||| | ||| | || || || || || Sbjct 1948 TTTCATAGTTAA-TAGGAAACAAGAACTCATCTAAGGTTTTG--GGGTACCTGCGTTGAA 2004 Query 63626 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63685 | ||||||| ||| || || |||||| || | | || || ||| || |||| ||| Sbjct 2005 AAGTGTAGGAGTAGCATGAGTGAACCATAATTGACTCATTAAATCGTAGGTTTCAAAAGC 2064 Query 63686 TGAGTCTATATCCCATTGATGAATTCC--TACTGCGACACGCATTAACATGTGCTGAGGT 63743 | || | ||| || || || || |||| || | ||| | |||||| |||||| Sbjct 2065 CGCTTCAAGATCATCTTTTTGGATGCCAATACT--TACTCTCATAAGCATGTGTTGAGGT 2122 Query 63744 CTTTCAACGATCTT-GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63802 ||||| | || || ||| | |||| || | || | | |||| | |||| ||||||| Sbjct 2123 CTTTCTATAATTTTAGTTCCCTCTTTT-AAAAGATAAGCTCTTTCTAGAGTTCTAAAACC 2181 Query 63803 AAAATAGTTGTA 63814 ||| || | ||| Sbjct 2182 AAAGTAATCGTA 2193 >seq6480 Length=2904 Score = 282 bits (312), Expect = 5e-71 Identities = 763/1145 (67%), Gaps = 42/1145 (4%) Strand=Plus/Minus Query 62685 TCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62743 ||||| ||||| ||| || | |||| || || ||||| |||| || |||||||||||| Sbjct 1837 TCAAA-GGATATTTTGAGCATCATAAGGGCATCAGCTAAACCTTAAATACCAATACCGAT 1779 Query 62744 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTA 62802 |||||| |||||| | |||||| | ||||| | | | |||||| | || | |||| Sbjct 1778 AGGTCTGTGTCTCATGTTAGAGTTGCGGGCTTCATCGCA-AGGATAGAAGTTGTTGTCTA 1720 Query 62803 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62862 | ||| |||| | ||| | |||| || | || | | || || | |||||| Sbjct 1719 TGATTCTATTTAAATTACGAGTAATTTGCATGGCTACTTAATGAAGCTTATCATAATCAA 1660 Query 62863 ATCGCCCATCTATTACAAACATGTTCAAGGCA-----ACAGATGCCAGATTACAAACGGC 62917 | |||| || || | | | ||| | | ||||| | ||| || || || Sbjct 1659 AGGCTCCAT---TTGAAATGAAG--CGAGGAAGTGAGATTGATGCTAAATTGCATACAGC 1605 Query 62918 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGT 62977 |||||||| | | ||||| || |||||| ||||| ||| | |||||| || Sbjct 1604 TACCTCATCTGGGGAAGTATATTCAATGATCTCACAACAAAGGTTAGAGCTCTTGATGGT 1545 Query 62978 TCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCATCCTTATAAAGAATGAATGGAG 63036 ||| | ||| | || |||||| || |||| || | ||| || ||||| ||| |||||| Sbjct 1544 TCCAAGATTCTTTTAATTACTTTTACTGTTGGCATG-ATCTTTGTAAAGCATGTATGGAG 1486 Query 63037 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG 63096 | ||||||||||| | ||| ||||| |||| ||| | | |||| |||| |||| Sbjct 1485 TTCCAGTTTCAATTTAGCTTTCAATAATAGCTTCCCAAAGTTTTTGAGC-TTTA--ATAG 1429 Query 63097 ATTTGTATCT-CCTTT---CTCTT--TCGTAT--AGTGTATACAATCGTTCGAACTCGTC 63148 ||| ||| || | ||||| |||||| |||||||| | ||||||| || Sbjct 1428 TTTT---TCTGCCGATACCCTCTTGTTCGTATCTAGTGTATAGCTTAA--CGAACTCTTC 1374 Query 63149 TCCCCAAACATTGTCCAAT----CCAGGACATTCATCCGGACACATCAACGACCACTCTC 63204 ||| || | | ||| || | | ||||| || || | || | ||| |||| Sbjct 1373 TCCGTGGACCT---CAAATAAACCCTTGGC-TTCATTGGGGCAGAATAAGGTCCAGTCTC 1318 Query 63205 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63264 | | ||| | |||| || ||||||||||||||||| ||| | ||| | || ||||||| Sbjct 1317 CATTATCTCTTACTCTTTCCATAAAGAGATCAGGAACCCACAAAGCAAAGAAAAGATCTC 1258 Query 63265 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63324 | | ||| |||||||| || || ||| || || | ||||| | | || |||| Sbjct 1257 TTGCTCTTTGTTCCTCTTTACCGTGATTTTTACGGAGCTATAGGAAATCAAAGATGTCAG 1198 Query 63325 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63384 ||||| ||||| || || ||||| | | ||| | || || || ||||||| Sbjct 1197 CGTGCCATGGTTCTAAATAGATGGCGAAAGATCCTTTTCTCTTACCACCACCTTGATCTA 1138 Query 63385 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63444 || | || || | ||| | ||||||| ||| || | || || || || ||| | Sbjct 1137 CATAACGGGCAGTTTCATTGAAGACTCTCAGCATGGGTACAAGGCCATTAGAATGACCGT 1078 Query 63445 TGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63504 | || || ||| ||| |||| | || | ||| ||| || | || || | ||| | Sbjct 1077 TTGTTCCCTTGATGTAGGATCCAGTAGCTCTAATGTTATGAACAGCAAGTCCAACTCCTC 1018 Query 63505 CTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTGTCATAGATACCCTCTATGCTA 63563 | || | |||||||| | ||| || | || || || ||||| |||||| || | Sbjct 1017 CAGCACTCTTAGAGATAAGAGCG-ATATTCTTCAAAGTATCATATATACCCATAATTGAA 959 Query 63564 TCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 63623 ||||| |||| | || | |||||||| |||||| | | |||||| |||||| Sbjct 958 TCATCCTTCATCATGAGCAAGAAACAGCTGCTCATTTGAGGTTTAGGAGTTCCGGCATTA 899 Query 63624 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63683 |||| ||||||| |||||| || |||||| | ||| | || || || || ||||| Sbjct 898 AATAGAGTAGGAGTAGCGTGAGTGAACCATCTATCACTCATAAGGTTATATGTTTCAATT 839 Query 63684 GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 63743 || || || ||||| || |||||| || |||| ||||||| | ||| | |||||| Sbjct 838 GCAGAATCAATATCTTCTTTATGAATACCGACTGAAACACGCAAGAGCATTTATTGAGGT 779 Query 63744 CTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 63803 || ||| | || ||| || || || | || || ||| |||| ||||||||||| ||| Sbjct 778 CTCTCAGCAATTTTGCCATTAATCTTAAGTAAATAAGATCTTTCTAAAGTTTTAAAGCCA 719 Query 63804 AAATA 63808 || || Sbjct 718 AAGTA 714 >seq5752 Length=1520 Score = 141 bits (156), Expect = 1e-28 Identities = 397/599 (66%), Gaps = 8/599 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| |||||||| ||||| ||||| || | | || || || || || || ||||| Sbjct 511 ACAAGCGAAATCAGTGTGCATGCCCTCATCACGAGAGATAAGCTCATTTGAGAAAGTGAG 570 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || ||||||||||| ||||| || || || ||| || || |||||||| Sbjct 571 GCCTGGCATGAGACCACGCTTTTTTAGCCAGAAGATTGAGCAGAAAGACCCTGAAAAGAA 630 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTGTCATGTA 33481 |||||||| | ||||| || |||| ||||| || |||| | | ||| || | Sbjct 631 AATTCCTTCAATAGCAGCGAAAGCAACGAGTCTTTCAGCATAGCTATTGTCTGAACTG-A 689 Query 33482 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33541 |||| | ||||| || || ||||| | ||| || || || || || | Sbjct 690 TCCATCTCATTGCCCATTCAGCTTTCTTAGTAACAACTGGGATAAAGGAGATAGCTTTGA 749 Query 33542 AGAG-ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 |||| ||| | || || | || ||| | ||||| || | ||| ||| | Sbjct 750 AGAGCATA-TCCTTCTCCTAGGCGTCGCTAATAAGGGTATCAATAAGGAGAGAATAGGTC 808 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || |||||||| || || ||| | |||||| ||||| || | || || | | Sbjct 809 TCTGAGTGAATGTTCTCCATCATCATTTAAAATCCATAGAAGCAACGTGCTTCAGGGACT 868 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 | | ||| || || |||| || |||||||| ||| || || |||||||| ||||| Sbjct 869 TAGATTTCAGTGCAGAATCTTTGAGCCAAATTCTCAACTACAATACCGTCACTAGCTGCG 928 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGTGTTAGTTTATTCCAATC 33779 || || || | || || || || || | |||| | | || | ||| | | |||||| Sbjct 929 AAGAAAGCTAGAACGTGCTTAATGAAGTGGCGTTCGTTATCGT-TGAGTCTCTCCCAATC 987 Query 33780 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTT 33838 || | ||| | | | ||| | ||||| | ||||| |||| |||| |||| | | Sbjct 988 TTTAACATCAGTGGCGAGATCGATCTCTTCTGCAGTCCAGAATGCTGCCATCTG-ATCCT 1046 Query 33839 TATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 | ||||| ||||||||||| | || ||| || | ||| || ||||| || || ||| Sbjct 1047 TGTACATTTTCCAGATGTCGTTGTACCTGATAGGTAGAATGACGAATCTGTTAGGGTTT 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622749484345560