Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq19711 131 1e-25 seq20137 116 3e-21 seq20138 105 6e-18 seq15980 102 7e-17 seq5918 100 2e-16 seq10285 82.4 7e-11 >seq19711 Length=592 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||| || | || || ||||| | ||||| ||| | || ||| | || || || || Sbjct 137 AAGATGTAAATCTTCGTTAAAACCCTTACTGGCAAAACTATCACCTTGGACGTTGAACCC 196 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||| || | || || ||||| ||||| ||||| || ||||||||| Sbjct 197 TCAGACACCATTGAAAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATCCCTCCCGAT 256 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | || || || |||||||||| | |||| ||||||| || Sbjct 257 CAACAGAGACTCATCTTCGCTGGAAAATAACTCGAAGACGGAAGAACTCTCAGCGACTAC 316 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||||||||| || |||| || || | |||||||||||||| Sbjct 317 AACATCCAAAAAGAATCAACTCTTCACTTGGTTCTTAGATTGAGAGGAGG 366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | || || || || | ||||| || | || ||| |||| || ||| | Sbjct 368 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGATGTTGAGCCTTCA 427 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | ||||| ||||| ||||| ||||| || || ||||||||| Sbjct 428 GATACCATTGAGAATGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 487 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | || ||| |||||| | ||||||| |||| | || || || Sbjct 488 CAAAGACTTATCTTCGCCGGAAAGCAATTGGAAGATGGAAGAACACTTTCTGACTACAAT 547 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGA 24215 |||||||| ||||| || | || || || || ||| | |||||| Sbjct 548 ATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGACTTAGAGGA 592 >seq20137 Length=989 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | || ||| | || || ||| || Sbjct 392 ATGCAAATCTTTGTTAAGACCCTCACTGGTAAAACCATCACCTTAGATGTTGAGCCCTCT 333 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || |||||| ||||||||||| || || ||||||||| Sbjct 332 GACACAATCGAGAATGTTAAGGCCAAGATTTAGGACAAAGAAGGAATTCCCCCCGATCAA 273 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||| || | || || || || || ||||||| |||| | | || || ||| Sbjct 272 TAGAGACTTATCTTCGCTGGTAAACAGCTAGAAGATGGTAGAACCTTATCTGACTACAAC 213 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || || || | || || || |||||| | ||||| || Sbjct 212 ATTCAAAAGGAGTCAACCCTCCACTTGGTCTTAAGACTCAGAGGTGG 166 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 || || || || || |||||||| | || || | || || ||| | | |||||||| Sbjct 611 TTCGTTAAGACTTTGACTGGAAAGACTATCACTCTTGACGTTGAGCCTAGTGACACCATT 552 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | ||||| ||||| || |||||||| || || ||||||||||||||| || Sbjct 551 GAAAATGTCAAGGCTAAGATCTAAGATAAAGAAGGTATCCCACCCGATCAACAGAGATTG 492 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 |||| || ||| |||||||| || |||| |||| | || || |||||||| | ||| Sbjct 491 ATTTTCGCCGGAAAGCAACTTGAGGATGGAAGAACCCTCTCTGACTATAACATCTAGAAA 432 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || |||| || || | ||| | ||||| || Sbjct 431 GAATCAACTCTTCACTTGGTCCTCAGACTAAGAGGTGG 394 >seq20138 Length=732 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 || || || || || |||||||| | || || | || || ||| | | |||||||| Sbjct 354 TTCGTTAAGACTTTGACTGGAAAGACTATCACTCTTGACGTTGAGCCTAGTGACACCATT 295 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | ||||| ||||| || |||||||| || || ||||||||||||||| || Sbjct 294 GAAAATGTCAAGGCTAAGATCTAAGATAAAGAAGGTATCCCACCCGATCAACAGAGATTG 235 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 |||| || ||| |||||||| || |||| |||| | | || || ||||||||||| Sbjct 234 ATTTTCGCCGGAAAGCAACTTGAGGATGGAAGAACCCTTTCTGACTACAACATTCAAAAG 175 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || | || || || | ||| | ||||| || Sbjct 174 GAGTCAACCCTCCACTTGGTTCTCAGACTCAGAGGTGG 137 >seq15980 Length=3053 Score = 102 bits (112), Expect = 7e-17 Identities = 161/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 23992 TGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCAT----CGAAGTCGAGGCC 24047 || || | ||||||||||| |||||||||||| | || || || | | | |||| Sbjct 2173 TGGAAATATTTGTAAAAACTTTAACTGGAAAAACAATCACTATTTACTGCAATGGAGG-- 2230 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || || || | | ||| |||| || || |||||||| || ||||| ||| Sbjct 2231 --TGATACAATTGAATCATTAAAAGAAAAAGTTTAGGATAAAGAAGGAATTCCTCCAGAT 2288 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||| | ||| |||||| | || | |||| | ||| || || | | | ||| ||| Sbjct 2289 CAATAAAGAATGATTTTTGCTGGAATGCAATTAGAAAATCACTTCACCTTGGACGAATAT 2348 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | ||| |||| ||||||||| |||||||||| |||||| | |||||||| Sbjct 2349 AGAATTTAAAATGAATCTACACTTCATTTAGTTTTAAGACTCAGAGGAGG 2398 >seq5918 Length=2920 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || || || || ||||||| | || || || || Sbjct 2821 AAAATGTAGATATTCGTCAAGACTTTGACGGGCAAGACGATTACTCTAGACGTTGAACCC 2762 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||| ||| | || || |||||| ||||||||||| || || || ||| Sbjct 2761 TCTGACACCATAGAGAACGTGAAGGCCAAGATTCAAGACAAAGAAGGAATCCCCCCTGAT 2702 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 |||||||||||||| | | || ||| || | ||||||| |||| | | || || Sbjct 2701 CAACAGAGACTGATCTTTGCAGGAAAGTAATTGGAAGATGGAAGAACCTTGTCTGACTAC 2642 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||| ||||| || | ||||| || || ||| | ||||| || Sbjct 2641 AATATCCAAAAGGAATCCACTCTCCATTTGGTCTTGAGACTCAGAGGTGG 2592 >seq10285 Length=3207 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 24013 TAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAAC 24072 ||||||||||| ||||| || || || ||| || ||| || ||| | | ||| Sbjct 1085 TAACTGGAAAAGTAATTACTATAGATGTAGAGAGCATAACCACAATTGAGGATTTAAAAT 1026 Query 24073 AAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCA 24132 | ||| || |||||| || ||||| |||||| ||||||| |||| | || | Sbjct 1025 AGTTGATACAAGATGCAGAAGGTATCCCTCCTGATCAATAGAGACTTATTTTTGCAGGGA 966 Query 24133 AGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATT 24191 | || | |||||| | |||| | | || |||||||| || ||| ||| || | | || Sbjct 965 AATAATTAGAAGATAATAGAA-CTTTGGCTGATTATAATATATAAAGAGATTCAAGACTT 907 Query 24192 CATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||||||| | ||||| ||| Sbjct 906 CATTTAGTGTTAAGGCTAAGAGGTGGA 880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429802955095605