Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6853 136 3e-27 seq5918 136 3e-27 seq19711 107 1e-18 seq23651 98.7 7e-16 seq20137 98.7 7e-16 seq23652 91.5 1e-13 seq20138 84.2 1e-11 >seq6853 Length=7513 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 1219 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1278 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1279 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1313 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| ||||||||||||||||||| || | Sbjct 3207 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCTTCACAGTACTTGTTCGCTATCGGTTTCCC 3266 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 3267 ATATATATTTAGCCTTA 3283 >seq5918 Length=2920 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | | ||| |||||||| |||||| |||||||| |||||||| |||||| Sbjct 2592 CCACCTCTGAGTCTCAAGACCAAATGGAGAGTGGATTCCTTTTGGATATTGTAGTCAGAC 2651 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || | | | || || |||| ||||| ||||| || || | |||||||| | |||| Sbjct 2652 AAGGTTCTTCCATCTTCCAATTACTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGGGGG 2711 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||| || |||||| |||| | || || |||||| Sbjct 2712 ATTCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTCTCTATGGTGTCAGAGGGTTCAACG 2771 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| ||||| || || |||||||| || || |||||||||| ||| || Sbjct 2772 TCTAGAGTAATCGTCTTGCCCGTCAAAGTCTTGACGAATATCTACATTTT 2821 >seq19711 Length=592 Score = 107 bits (118), Expect = 1e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 38094 CCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAA 38153 ||||| | | ||| ||||| || |||||| ||||||||||||||||| ||||| | Sbjct 591 CCTCTAAGTCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCAGAAAGT 532 Query 38154 ACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACG 38213 | | | || || ||||| |||||||| || || || | ||||||||||| ||| | Sbjct 531 GTTCTTCCATCTTCCAATTGCTTTCCGGCGAAGATAAGTCTTTGTTGATCGGGGGGAATA 472 Query 38214 CCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCT 38273 ||||| |||||| || || ||| ||||||| | |||||| | ||||| || Sbjct 471 CCTTCCTTGTCCTAGATCTTGGCCTTGACATTCTCAATGGTATCTGAAGGCTCAACATCG 412 Query 38274 AATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || | ||| || ||||| || | ||| Sbjct 411 AGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTACAT 368 >seq23651 Length=1360 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/71 (92%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG-GTAAT 20012 |||||||||||||||| |||||||||||||||||||||||||||||||||| || ||| Sbjct 1360 TTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCCAAT 1301 Query 20013 ATTTAGCCTTA 20023 ||||||| ||| Sbjct 1300 ATTTAGCTTTA 1290 >seq20137 Length=989 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | | || ||||| || || || |||||||||||| ||||| ||||| Sbjct 166 CCACCTCTGAGTCTTAAGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAT 225 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || | | || |||| ||||| || || || || || | | |||||||| ||| Sbjct 226 AAGGTTCTACCATCTTCTAGCTGTTTACCAGCGAAGATAAGTCTCTATTGATCGGGGGGA 285 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| ||| || ||| ||||||| || || || ||||| Sbjct 286 ATTCCTTCTTTGTCCTAAATCTTGGCCTTAACATTCTCGATTGTGTCAGAGGGCTCAACA 345 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || |||||||| || | ||| || || || || ||||| Sbjct 346 TCTAAGGTGATGGTTTTACCAGTGAGGGTCTTAACAAAGATTTGCAT 392 >seq23652 Length=520 Score = 91.5 bits (100), Expect = 1e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 |||||||||||||||| ||||||||||||||||||||| |||||||||||| | ||| Sbjct 520 TTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTCTTCCATA 461 Query 20014 TTTAGCCTTA 20023 |||||| ||| Sbjct 460 TTTAGCTTTA 451 >seq20138 Length=732 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/235 (68%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 38083 AATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 ||||| ||||||||| | | | ||||| || || || |||||||||||| |||| Sbjct 131 AATCA--ACCACCTCTGAGTCTGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGT 188 Query 38143 AATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202 | ||||| | | | | || || | ||| |||||||| || || | | ||||||| Sbjct 189 AGTCAGAAAGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGAT 248 Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC 38262 ||| |||| |||||||| || || || ||| ||||| | | || || | | Sbjct 249 CGGGTGGGATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAG 308 Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || | || ||||| || || ||||| || || ||||| |||| ||| Sbjct 309 GCTCAACGTCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334843549646921