Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6480 293 3e-74 seq16451 280 2e-70 seq5752 141 1e-28 >seq6480 Length=2904 Score = 293 bits (324), Expect = 3e-74 Identities = 759/1137 (67%), Gaps = 26/1137 (2%) Strand=Plus/Minus Query 62540 TCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGAT 62598 ||||| ||||| ||| || | |||| || || ||||| |||| || |||||||||||| Sbjct 1837 TCAAA-GGATATTTTGAGCATCATAAGGGCATCAGCTAAACCTTAAATACCAATACCGAT 1779 Query 62599 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTA 62657 |||||| |||||| | |||||| | ||||| | | | |||||| | || | |||| Sbjct 1778 AGGTCTGTGTCTCATGTTAGAGTTGCGGGCTTCATCGCA-AGGATAGAAGTTGTTGTCTA 1720 Query 62658 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62717 | ||| |||| | ||| | |||| || | || | | || || | |||||| Sbjct 1719 TGATTCTATTTAAATTACGAGTAATTTGCATGGCTACTTAATGAAGCTTATCATAATCAA 1660 Query 62718 ATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCT 62777 | |||| | | || | || | ||||| | ||| || || ||||||| Sbjct 1659 AGGCTCCATTTGAAATGAAGCGAGGAAGTGAGATTGATGCTAAATTGCATACAGCTACCT 1600 Query 62778 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 62837 ||| | | ||||| || |||||| ||||| ||| | |||||||||||| | Sbjct 1599 CATCTGGGGAAGTATATTCAATGATCTCACAACAAAGGTTAGAGCTCTTGATGGTTCCAA 1540 Query 62838 AATTTTGTTGATTACTCTTTTTGTTA-CACGCATCCTTATAAAGAATGAATGGAGTACCA 62896 ||| | || |||||| || |||| || | ||| || ||||| ||| ||||||| ||| Sbjct 1539 GATTCTTTTAATTACTTTTACTGTTGGCATG-ATCTTTGTAAAGCATGTATGGAGTTCCA 1481 Query 62897 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 62956 |||||||| | ||| ||||| |||| ||| | | |||| |||| |||| ||| Sbjct 1480 GTTTCAATTTAGCTTTCAATAATAGCTTCCCAAAGTTTTTGAGC-TTTA--ATAGTTTTT 1424 Query 62957 -TATCTCTTTTCTCTT--TCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 63011 | | | ||||| |||||| |||||||| | ||||||| ||||| | Sbjct 1423 CTGCCGATACCCTCTTGTTCGTATCTAGTGTATAGCTTAA--CGAACTCTTCTCCGTGGA 1366 Query 63012 CATTGTCCAGT----CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCC 63067 | | | | | || | | ||||| || || | || | ||| ||||| | ||| Sbjct 1365 CCT---CAAATAAACCCTTGGC-TTCATTGGGGCAGAATAAGGTCCAGTCTCCATTATCT 1310 Query 63068 TTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 63127 | |||| || ||||||||||||||||| ||| | ||| | || |||||||| | ||| Sbjct 1309 CTTACTCTTTCCATAAAGAGATCAGGAACCCACAAAGCAAAGAAAAGATCTCTTGCTCTT 1250 Query 63128 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63187 |||||||| || || ||| || || | ||||| | | || |||| ||||| Sbjct 1249 TGTTCCTCTTTACCGTGATTTTTACGGAGCTATAGGAAATCAAAGATGTCAGCGTGCCAT 1190 Query 63188 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63247 ||||| || || ||||| | | ||| | || || || ||||||| || | Sbjct 1189 GGTTCTAAATAGATGGCGAAAGATCCTTTTCTCTTACCACCACCTTGATCTACATAACGG 1130 Query 63248 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCT 63307 || || | ||| | ||||||| ||| || | || ||||| || ||| || || || Sbjct 1129 GCAGTTTCATTGAAGACTCTCAGCATGGGTACAAGGCCATTAGAATGACCGTTTGTTCCC 1070 Query 63308 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367 ||| ||| |||| | || | ||| ||| || | || || | ||| || || | Sbjct 1069 TTGATGTAGGATCCAGTAGCTCTAATGTTATGAACAGCAAGTCCAACTCCTCCAGCACTC 1010 Query 63368 TTAGAGATTAATGCGCATCGTTTT-AACGTATCATAGATGCCCTCTATACTATCATCCAT 63426 |||||||| | ||| || | || || |||||||| || ||| || ||||||| | Sbjct 1009 TTAGAGATAAGAGCG-ATATTCTTCAAAGTATCATATATACCCATAATTGAATCATCCTT 951 Query 63427 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 63486 ||| | || | |||||||| |||||| | | |||||| |||||||||| || Sbjct 950 CATCATGAGCAAGAAACAGCTGCTCATTTGAGGTTTAGGAGTTCCGGCATTAAATAGAGT 891 Query 63487 AGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63546 ||||| ||||||||| |||||| | ||| | || || || || ||||| || || || Sbjct 890 AGGAGTAGCGTGAGTGAACCATCTATCACTCATAAGGTTATATGTTTCAATTGCAGAATC 831 Query 63547 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63606 ||||| || |||||| || |||| ||||||| | ||| | |||||||| ||| | Sbjct 830 AATATCTTCTTTATGAATACCGACTGAAACACGCAAGAGCATTTATTGAGGTCTCTCAGC 771 Query 63607 GATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63663 || ||| || || || | || || ||| |||| ||||||||||| ||||| || Sbjct 770 AATTTTGCCATTAATCTTAAGTAAATAAGATCTTTCTAAAGTTTTAAAGCCAAAGTA 714 >seq16451 Length=2876 Score = 280 bits (310), Expect = 2e-70 Identities = 772/1153 (67%), Gaps = 40/1153 (3%) Strand=Plus/Plus Query 62540 TCAAATGGATAATTTAAGAGAATAAAC-GCGTCTGCTAATCCTTGAACACCAATACCGAT 62598 ||||||||||| ||||||| |||| || ||||| || |||| |||||||||||| || Sbjct 1058 TCAAATGGATA-TTTAAGAAGTTAAAGAGCATCTGCAAAACCTTAAACACCAATACCAAT 1116 Query 62599 AGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTA 62657 ||||||||| | ||| || || || ||||||| || || ||||||||| |||| | Sbjct 1117 GGGTCTATGTTTAAGATTTGA-ATATCTTGCTTCTGAAACTGGGTAATAATTATTATCAA 1175 Query 62658 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62717 | || || || | ||| | |||| |||| ||||| | || || | | ||| Sbjct 1176 TTATCTTGTTTAAATTCTTAGTAATTCTTTTGGTAACATCATGCAACTTCTCATAGTCAT 1235 Query 62718 ATCGCCCA---TCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGG 62771 || | ||| || |||||| |||| || || | || || |||||||| || | Sbjct 1236 ATTCTTTAGTTTCTGTTTTTACAAACCTGTTTAAGGCTATTGAGGCTAGATTACATACAG 1295 Query 62772 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGG 62831 |||| |||| | | ||||| || || ||||| || ||||| || || ||| Sbjct 1296 CTACTTCATCTGGGCTAGTATATTCTACAATTTCAGTACAGAGATTTGAACTTTTTATGC 1355 Query 62832 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 62891 || | ||||||| |||| ||| ||||||| | ||| || || || || |||||| Sbjct 1356 ACCCCAGGTTTTGTTAATTAGATTTTCTGTTACAAGTATCTTTGTATAGCATATATGGAG 1415 Query 62892 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG 62951 | ||||| ||||| |||||||||| |||| |||| | || ||||||||| | Sbjct 1416 TTCCAGTCTCAATTTGAGATTCTACAATCTAGCTCCATAACCATCTAGCCTTTATAGTC- 1474 Query 62952 ATTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCA 63009 ||| | ||||| ||||| || ||| | ||| | | ||||| || |||||||| Sbjct 1475 -TTTCTGCCTCTTCCCTCTTCTTCATATTTTTCATAAAGTTTCTCGAATTCTTCTCCCCA 1533 Query 63010 AACAT-TGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63068 ||| | || || || || |||| |||||||| | | ||| ||| |||| || Sbjct 1534 G-CATGTAGTCAAACCTGGGCACTCATTAGGACACATTAGAGTCCATTCT---TCATTCT 1589 Query 63069 TC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTT 63124 | |||| ||||||||| ||||| || ||||| || || ||| ||||||||||||| | Sbjct 1590 TTTCGACTCTTTTCATAAAAAGATCTGGGATCCAGAGTGC-ATAGAATAGATCTCTGGCT 1648 Query 63125 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT-AATATCAGAATG 63183 |||| ||| || || || ||||||| |||| | ||||| | ||| |||||||| ||| Sbjct 1649 CTATTTTCTTCTTTGCCATGATTCTTTCTAAGTTAAAGGAA-GTCATAAATATCAGCATG 1707 Query 63184 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63243 ||| ||||| | || | || | |||| | || ||||| ||||| | || Sbjct 1708 CCAAGGTTCTACATAGACAGCAAATGCTCCTTTTCTCTTTCCACCTCCTTGATCAACATA 1767 Query 63244 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGT 63303 ||||| |||| |||| ||||| | | ||| |||| || || || | ||| || || Sbjct 1768 CCTAGCAGTGTCATTAAAAACTTTAAGCATAGGAACAAGTCCGTTTGCATAACCGTTAGT 1827 Query 63304 CCCTGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63362 ||| |||| || || || || | |||| | ||||| || || || |||| Sbjct 1828 TCCTCTAATATAAGAATCTGCT-GCTCTTATATCTGAGACTGATACTCCAATGCCACCTG 1886 Query 63363 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 63422 | || ||||| | || | || | || ||| |||| || |||| | ||| | Sbjct 1887 CGGCCTTGGAGATAACAGCAATTTACTTGAGTGTTTCAAAGATACCTTCTACAGAATCTT 1946 Query 63423 CCATCAT-GTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAGTTCCCGCATTAA 63479 | |||| ||||| ||| ||||| | ||| | ||| | || || || || | Sbjct 1947 CTTTCATAGTTAA-TAGGAAACAAGAACTCATCTAAGGTTTTG--GGGTACCTGCGTTGA 2003 Query 63480 ATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63539 | | ||||||| ||| ||||| |||||| || | | || || ||| || |||| || Sbjct 2004 AAAGTGTAGGAGTAGCATGAGTGAACCATAATTGACTCATTAAATCGTAGGTTTCAAAAG 2063 Query 63540 CTGAGTCTATATCCCATTGATGAATTCC--TACTGCGACACGCATTAACATGTGCTGAGG 63597 | | || | ||| || || || || |||| || | ||| | |||||| ||||| Sbjct 2064 CCGCTTCAAGATCATCTTTTTGGATGCCAATACT--TACTCTCATAAGCATGTGTTGAGG 2121 Query 63598 TCTTTCAACGATCTT-GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 63656 |||||| | || || ||| | |||| || | || | | |||| | |||| |||||| Sbjct 2122 TCTTTCTATAATTTTAGTTCCCTCTTTT-AAAAGATAAGCTCTTTCTAGAGTTCTAAAAC 2180 Query 63657 CAAAATAGTTGTA 63669 |||| || | ||| Sbjct 2181 CAAAGTAATCGTA 2193 >seq5752 Length=1520 Score = 141 bits (156), Expect = 1e-28 Identities = 400/601 (67%), Gaps = 10/601 (2%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| |||||||| ||| | ||||| || | | || | || || || || ||||| Sbjct 511 ACAAGCGAAATCAGTGTGCATGCCCTCATCACGAGAGATAAGCTCATTTGAGAAAGTGAG 570 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 32778 || ||||| || ||||||||||| ||||| || || || ||| || || || ||||||| Sbjct 571 GCCTGGCATGAGACCACGCTTTTTTAGCCAGAAGATTGA-GCAGAAAGACCCTGAAAAGA 629 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTGTCATGT 32837 |||||||||| | || || || |||| ||||| || |||| | | ||| || Sbjct 630 AAATTCCTTCAATAGCAGCGAAAGCAACGAGTCTTTCAGCATAGCTATTGTCTGAACTG- 688 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| | ||||| || || ||||| | ||| || || ||||| || Sbjct 689 ATCCATCTCATTGCCCATTCAGCTTTCTTAGTAACAACTGGGATAAAGGAGATAGCTTTG 748 Query 32898 AAGAG-ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||||| ||| | || || | || ||| | |||||||| | ||| ||| | Sbjct 749 AAGAGCATA-TCCTTCTCCTAGGCGTCGCTAATAAGGGTATCAATAAGGAGAGAATAGGT 807 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 || || |||||||| || || ||||| |||||| |||||||| | || || | | Sbjct 808 CTCTGAGTGAATGTTCTCCATCATCATTTAAAATCCATAGAAGCAACGTGCTTCAGGGAC 867 Query 33017 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 33076 | | ||| || || |||| || || ||||| ||| || || |||||||| ||||| Sbjct 868 TTAGATTTCAGTGCAGAATCTTTGAGCCAAATTCTCAACTACAATACCGTCACTAGCTGC 927 Query 33077 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATTCCAAT 33135 || || || | || || || || || | ||||| | || | ||| | | ||||| Sbjct 928 GAAGAAAGCTAGAACGTGCTTAATGAAGTGGCGTTCGTTATCGT-TGAGTCTCTCCCAAT 986 Query 33136 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTT 33194 | || | ||| | | | ||| | ||||| | ||||| |||| |||| |||| | Sbjct 987 CTTTAACATCAGTGGCGAGATCGATCTCTTCTGCAGTCCAGAATGCTGCCATCTGA-TCC 1045 Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTT 33254 || ||||| ||||||||||| | || || || | ||| || ||||| || || ||| Sbjct 1046 TTGTACATTTTCCAGATGTCGTTGTACCTGATAGGTAGAATGACGAATCTGTTAGGGTTT 1105 Query 33255 T 33255 | Sbjct 1106 T 1106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633430893123600