Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq20137 116 3e-21 seq5918 113 4e-20 seq10285 111 1e-19 seq20138 102 7e-17 seq15980 102 7e-17 seq19711 100 2e-16 >seq20137 Length=989 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || |||||| ||||||| | || || ||| | ||| Sbjct 392 ATGCAAATCTTTGTTAAGACCCTCACTGGTAAAACCATCACCTTAGATGTTGAGCCCTCT 333 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || || ||||||||||| ||||| || || ||| Sbjct 332 GACACAATCGAGAATGTTAAGGCCAAGATTTAGGACAAAGAAGGAATTCCCCCCGATCAA 273 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||| || || || ||||| ||||||||| | | || | || ||||| Sbjct 272 TAGAGACTTATCTTCGCTGGTAAACAGCTAGAAGATGGTAGAACCTTATCTGACTACAAC 213 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || || || || || || || |||| || ||||| || Sbjct 212 ATTCAAAAGGAGTCAACCCTCCACTTGGTCTTAAGACTCAGAGGTGG 166 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||| |||| || ||||| || | ||||| || | || || |||| || ||| | Sbjct 852 AAAAATGTAAATCTTCGTAAAAACACTTACCGGAAAGACTATTACTCTCGATGTAGAGCC 793 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| ||| | ||| || ||| ||||| || || || |||||||| Sbjct 792 ATCTGACACTATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCTGA 733 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || | | || ||||| || || |||||||||| | | || | ||||| Sbjct 732 TCAATAGAGACTCATCTTTGCTGGAAAGTAATTAGAAGACGGCAGAACCCTATCTGATTA 673 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || |||||||| || || || || || | || || |||||||| Sbjct 672 CAATATCCAGAAAGAATCAACCCTTCACTTGGTCTTGAGACTTAGAGGAGG 622 >seq5918 Length=2920 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||| | ||||| || ||||||||||| || || | || || | || || || | || Sbjct 2819 AATGTAGATATTCGTCAAGACTTTGACGGGCAAGACGATTACTCTAGACGTTGAACCCTC 2760 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || ||| ||||| | || | ||| ||||||||||| || || ||||| | Sbjct 2759 TGACACCATAGAGAACGTGAAGGCCAAGATTCAA-GACAAAGAAGGAATCCCCCCTGATC 2701 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | || ||||| || || |||| ||||||| | || || || |||| Sbjct 2700 AACAGAGACTGATCTTTGCAGGAAAGTAATTGGAAGATGGAAGAACCTTGTCTGACTACA 2641 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||| |||||||| || ||||| || | || || ||||| || Sbjct 2640 ATATCCAAAAGGAATCCACTCTCCATTTGGTCTTGAGACTCAGAGGTGG 2592 >seq10285 Length=3207 Score = 111 bits (122), Expect = 1e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 25097 AGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGA 25156 |||||| || || ||||| ||| || | |||||||||| || ||| ||||||||||| | Sbjct 1009 AGAAGGTATCCCTCCTGATCAATAGAGACTTATTTTTGCAGGGAAATAATTAGAAGATAA 950 Query 25157 TCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 | | ||| ||| ||||| ||||| ||| ||| || | || ||||||||| ||||||| Sbjct 949 TAGAACTTTGGCTGATTATAATATATAAAGAGATTCAAGACTTCATTTAGTGTTAAGGCT 890 Query 25217 AAGAGGAGGAA 25227 |||||| |||| Sbjct 889 AAGAGGTGGAA 879 >seq20138 Length=732 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||| |||| || ||||| || | ||||| || | || || |||| || ||| | Sbjct 595 AAAAATGTAAATCTTCGTAAAAACACTTACCGGAAAGACTATTACTCTCGATGTAGAGCC 536 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| ||| | ||| || ||| ||||| || || || |||||||| Sbjct 535 ATCTGACACTATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCTGA 476 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || | | || ||||| || || |||||||||| | | || | ||||| Sbjct 475 TCAATAGAGACTCATCTTTGCTGGAAAGTAATTAGAAGACGGCAGAACCCTATCTGATTA 416 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || |||||||| || || || || || | || || |||||||| Sbjct 415 CAATATCCAGAAAGAATCAACCCTTCACTTGGTCTTGAGACTTAGAGGAGG 365 >seq15980 Length=3053 Score = 102 bits (112), Expect = 7e-17 Identities = 161/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 25000 TGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGT----CGAAGTGGAGTCG 25055 || ||||||||||||| ||||| || || ||| | ||||| | | | ||||| Sbjct 2173 TGGAAATATTTGTAAAAACTTTAACTGGAAAAACAATCACTATTTACTGCAATGGAG--- 2229 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| || || || ||| | || ||||| | || |||||||| ||||| || || Sbjct 2230 -GTGATACAATTGAATCATTAAAAGAAAAAGTTTAGGATAAAGAAGGAATTCCTCCAGAT 2288 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||| | | || |||||||| || | ||||||||| || | ||| ||| ||| || Sbjct 2289 CAATAAAGAATGATTTTTGCTGGAATGCAATTAGAAAATCACTTCACCTTGGACGAATAT 2348 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||| |||| ||||| || || |||||||| |||| || |||||||| Sbjct 2349 AGAATTTAAAATGAATCTACACTTCATTTAGTTTTAAGACTCAGAGGAGG 2398 >seq19711 Length=592 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| || || ||||| | || || || ||||||| |||| || ||| | || Sbjct 368 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGATGTTGAGCCTTCA 427 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| | ||| || ||| ||||| ||||| ||||| || || ||| Sbjct 428 GATACCATTGAGAATGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 487 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||| || ||||| || ||||| ||||||| | || | || |||||| Sbjct 488 CAAAGACTTATCTTCGCCGGAAAGCAATTGGAAGATGGAAGAACACTTTCTGACTACAAT 547 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGA 25223 |||||||| |||||||| || || || || | || || |||||| Sbjct 548 ATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGACTTAGAGGA 592 Score = 82.4 bits (90), Expect = 7e-11 Identities = 169/250 (68%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 24977 ATAATTTGTACAAA-ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCA 25035 ||||||| || || || || ||| |||| || || || || | || || ||| | | Sbjct 117 ATAATTTCTATAATCACTTAAAGATGTAAATCTTCGTTAAAACCCTTACTGGCAAAACTA 176 Query 25036 TCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACA 25095 |||| | || || || | || ||||| || || ||||| || ||| |||| Sbjct 177 TCACCTTGGACGTTGAACCCTCAGACACCATTGAAAACGTGAAGGCTAAGATCCAAGACA 236 Query 25096 AAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 | ||||| || || || || |||||| | | || || || || ||| || | ||||| | Sbjct 237 AGGAAGGTATCCCTCCCGATCAACAGAGACTCATCTTCGCTGGAAAATAACTCGAAGACG 296 Query 25156 ATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGC 25215 | ||| | |||| ||||| || ||||||||||| || || || || || || || Sbjct 297 GAAGAACTCTCAGCGACTACAACATCCAAAAAGAATCAACTCTTCACTTGGTTCTTAGAT 356 Query 25216 TAAGAGGAGG 25225 | |||||||| Sbjct 357 TGAGAGGAGG 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433193905431665