Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10356 167 3e-36 seq16451 127 3e-24 >seq10356 Length=2916 Score = 167 bits (184), Expect = 3e-36 Identities = 247/350 (71%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 116247 ATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGC 116306 ||| |||| |||| ||||| || ||||| || | ||||||| ||||||| | | ||| Sbjct 1802 ATCAGCGAATCCTTAAACACCAAGTCCAATGGGTCTATGTCTCTTATTAGAATATTCAGC 1743 Query 116307 GGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 116366 || || ||||| | |||| ||| || ||| |||| |||||||| || | ||| Sbjct 1742 CTCCTTGACTGGATAGTAGTTCCCATCAATCACCTTATTCAGATTTTTAGTTATTCTCTT 1683 Query 116367 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 116426 ||| | | |||||| || |||||||| | ||||||| || |||||| | || Sbjct 1682 TGTTACTGAATGAAGTAAATCATAATCAAACTCTCTTGTCTCTTTCTTTACATACCTTGG 1623 Query 116427 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 116486 || || | ||| |||| ||||| |||| ||||| | || || || | ||| Sbjct 1622 TAGTGCTACTGAAGCCAAGTTACAAACAGCCACTTCATCAGGAGATGTATATTCAACAAT 1563 Query 116487 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 116546 ||| ||||||||||||||||| || || || ||||| || | | || |||||| | || Sbjct 1562 TTCAGTACACAAATTTGAACTTTTTATTGTTCCCAAATTTTGCTAGTTAGACTTTCTATT 1503 Query 116547 ACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT 116596 |||| ||||||||| |||||||| || || || ||||| ||| |||| Sbjct 1502 GCACGTATCCTTGTAAAGCATATAGGGTGTACCAGTCTCTAGTTGTGACT 1453 >seq16451 Length=2876 Score = 127 bits (140), Expect = 3e-24 Identities = 371/562 (66%), Gaps = 12/562 (2%) Strand=Plus/Plus Query 116246 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 116305 |||| || | ||||| ||||| | ||||| || | |||| | | ||| || | || | Sbjct 1086 CATCTGCAAAACCTTAAACACCAATACCAATGGGTCTATGTTTAAGATTTGAATATCTTG 1145 Query 116306 CGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 116364 | ||| | | || ||| |||| |||| || | | | |||| ||| || || | Sbjct 1146 CT-TCTGAAACTGGGTAATAATTATTATCAATTATCTTGTTTAAATTCTTAGTAATTCTT 1204 Query 116365 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 116424 || || | ||||| | ||| || || ||| | ||| ||| || ||| || | Sbjct 1205 TTGGTAACATCATGCAACTTCTCATAGTCATATTCTTTAGTTTCTGTTTTTACAAACCTG 1264 Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 | ||| ||||| || |||||||| |||| ||||| ||| || |||| | Sbjct 1265 TTTAAGGCTATTGAGGCTAGATTACATACAGCTACTTCATCTGGGCTAGTATATTCTACA 1324 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 ||||| ||||| | ||||||||| || ||| |||| ||| | || ||| || ||| || Sbjct 1325 ATTTCAGTACAGAGATTTGAACTTTTTATGCACCCCAGGTTTTGTTAATTAGATTTTCTG 1384 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA-- 116602 ||||| | ||| ||||| ||||||||||| || || ||||| |||| || | | || Sbjct 1385 TTACAAGTATCTTTGTATAGCATATATGGAGTTCCAGTCTCAATTTGAGATTCTACAATC 1444 Query 116603 TAGCCTTCCATA--CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTA 116660 |||| |||||| |||| || | ||| || ||| ||||| || || || Sbjct 1445 TAGC--TCCATAACCATC--TAGCCTTTATAGTCTTTCTGCCTCTTCCCTCTTCTTCATA 1500 Query 116661 CTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCT-GAGAGCCCTGGTGCCTTAT 116719 ||| || || ||| || ||||| ||| |||| | | | | ||||| || || Sbjct 1501 TTTTTCATAAAGTTTCTCGAATTCTTCTCCC-CAGCATGTAGTCAAACCTGGGCACTCAT 1559 Query 116720 CTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 116779 ||||| | |||| ||||| || || || || | ||||| || || ||||||| Sbjct 1560 TAGGACACATTAGAGTCCATTCTTCATTCTTTTCGACTCTTTTCATAAAAAGATCTGGGA 1619 Query 116780 TCCAGAGCGCCGAGAAGAGATC 116801 ||||||| || |||| ||||| Sbjct 1620 TCCAGAGTGCATAGAATAGATC 1641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613312480483560