Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5918 138 3e-27 seq20137 136 9e-27 seq19711 123 6e-23 seq20138 98.7 2e-15 >seq5918 Length=2920 Score = 138 bits (152), Expect = 3e-27 Identities = 166/225 (74%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| ||| | |||||||| || |||||||||| |||||||||| ||| || ||| Sbjct 2601 AGTCTCAAGACCAAATGGAGAGTGGATTCCTTTTGGATATTGTAGTCAGACAAGGTTCTT 2660 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||||| | |||||| || ||||| || | ||| || || || ||||||||| Sbjct 2661 CCATCTTCCAATTACTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGGGGGATTCCTTCT 2720 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || |||||||| ||||||| || | |||||| | | ||| || || | || Sbjct 2721 TTGTCTTGAATCTTGGCCTTCACGTTCTCTATGGTGTCAGAGGGTTCAACGTCTAGAGTA 2780 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTA 199636 |||||||| ||||| | ||| || || || || ||||||||| Sbjct 2781 ATCGTCTTGCCCGTCAAAGTCTTGACGAATAT---CTACATTTTA 2822 >seq20137 Length=989 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| | ||| | |||||| || ||||||||||| | ||||||||||| || || || Sbjct 175 AGTCTTAAGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGATAAGGTTCTA 234 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| ||||| || || |||||||| || | || || || || |||||||||| Sbjct 235 CCATCTTCTAGCTGTTTACCAGCGAAGATAAGTCTCTATTGATCGGGGGGAATTCCTTCT 294 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 |||| |||||| ||| || |||| ||||| | | || ||||| || ||| Sbjct 295 TTGTCCTAAATCTTGGCCTTAACATTCTCGATTGTGTCAGAGGGCTCAACATCTAAGGTG 354 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| || || ||||| ||||| Sbjct 355 ATGGTTTTACCAGTGAGGGTCTTAACAAAGATTTG 389 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | ||| ||||| || || || | || ||| ||||||| | || ||| Sbjct 403 AGTCTGAGGACCAAGTGAAGAGTTGATTCTTTCTAGATGTTATAGTCAGAGAGGGTTCTT 462 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || || |||||||||||||| || | | ||| || || || || |||||| Sbjct 463 CCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGTGGGATACCTTCT 522 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || | ||||| ||| || ||| | |||||| | | || || || | ||| Sbjct 523 TTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCAACGTCAAGAGTG 582 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 || ||||| || || | ||| || || || || Sbjct 583 ATAGTCTTTCCAGTCAAAGTCTTAACGAAGAT 614 >seq19711 Length=592 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| ||| | ||||||||| || |||||||| | |||||||||| | || Sbjct 589 TCTAAGTCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGT 530 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||||| ||||||||||||||||| || | || || || || ||| || Sbjct 529 TCTTCCATCTTCCAATTGCTTTCCGGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACC 470 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||| ||||| ||| || || | ||| |||| | || ||||| | Sbjct 469 TTCCTTGTCCTAGATCTTGGCCTTGACATTCTCAATGGTATCTGAAGGCTCAACATCGAG 410 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 ||||| ||||| || ||||| || || || || |||| Sbjct 409 GGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTT 372 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| ||||| || || ||||||| ||||||||| | ||| ||||| Sbjct 355 TCTAAGAACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCGCTGAGAGTTCTTCC 296 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| || | ||||| ||||||||||| | ||| || || ||| || ||||| Sbjct 295 GTCTTCGAGTTATTTTCCAGCGAAGATGAGTCTCTGTTGATCGGGAGGGATACCTTCCTT 236 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||||||| ||| | |||||||| | ||| || ||||| ||||| Sbjct 235 GTCTTGGATCTTAGCCTTCACGTTTTCAATGGTGTCTGAGGGTTCAACGTCCAAGGTGAT 176 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTT 199625 || || || || || ||||| || || |||| Sbjct 175 AGTTTTGCCAGTAAGGGTTTTAACGAAGATTT 144 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||||||||||||||||||||| |||||||||||||| || | | || ||||| Sbjct 489 AAAGACTTATCTTCGCCGGAAAGCAATTGGAAGATGGAAGAACACTTTCTGACTACAATA 548 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 | || || || || ||||| ||| | || ||||||||| || Sbjct 549 TTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGACTTAGA 589 >seq20138 Length=732 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| || || | |||||| || ||||||||||| | ||||||||||| | || ||| Sbjct 146 AGTCTGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTT 205 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || || |||||||||||||| || | | ||| || || || || |||||| Sbjct 206 CCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGTGGGATACCTTCT 265 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || | ||||| ||| || ||| | |||||| | | || || || | ||| Sbjct 266 TTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCAACGTCAAGAGTG 325 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 || ||||| || || | ||| || || || || Sbjct 326 ATAGTCTTTCCAGTCAAAGTCTTAACGAAGAT 357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178538070646197