Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq16451 354 9e-93 seq6480 300 2e-76 seq10356 147 2e-30 >seq16451 Length=2876 Score = 354 bits (392), Expect = 9e-93 Identities = 656/946 (69%), Gaps = 16/946 (2%) Strand=Plus/Plus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||||| || | ||||| || |||||||||||||||||||| |||| ||| ||||| Sbjct 1256 ACAAACCTGTTTAAGGCTATTGAGGCTAGATTACATACAGCTACTTCATCTGGGCTAGTA 1315 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984 |||| || ||||||| ||| ||||| || ||| || |||| ||||| | |||| Sbjct 1316 TATTCTACAATTTCAGTACAGAGATTTGAACTTTTTATGCACCCCAGGTTTTGTTAATTA 1375 Query 47985 TTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 ||||||| | || ||||| |||||| | || |||||||| || || |||||| Sbjct 1376 GATTTTCTGTTACAAGTATCTTTGTATAGCATATATGGAGTTCCAGTCTCAATTTGAGAT 1435 Query 48045 TCAATGATAGATTTCCA-AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATG 48103 || | || | |||| ||| || ||||||||||| ||| || | || | Sbjct 1436 TCTACAATCTAGCTCCATAACCATC-TAGCCTTTATAGTCTTTCTGCCTCTTCCCTCTTC 1494 Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACAT-TATCTAACCCAGGAC 48162 ||| ||||| ||| | ||||| ||||| || || | ||| || || || || | Sbjct 1495 TTCATATTTTTCATAAAGTTTCTCGAATTCTTCTCCCCAG-CATGTAGTCAAACCTGGGC 1553 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 | |||||||||||||| | | ||| || |||| |||| ||||| ||||||| | || Sbjct 1554 ACTCATTAGGACACATTAGAGTCCATTCTTCATTCTTTTCGACTCTTTTCATAAAAAGAT 1613 Query 48223 CTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTC 48281 |||| ||||| || || ||| |||| ||| || | ||| |||||| |||||| |||| Sbjct 1614 CTGGGATCCAGAGTGC-ATAGAATAGATCTCTGGCTCTATTTTCTTCTTTGCCATGATTC 1672 Query 48282 CTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 || |||||| ||| ||||| |||||||||||||| ||||||| ||| | || | | Sbjct 1673 TTTCTAAGTTAAAGGAAGTCATAAATATCAGCATGCCAAGGTTCTACATAGACAGCAAAT 1732 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 | ||| || || |||||||||||| | ||| || ||||| | ||| ||||| | Sbjct 1733 GCTCCTTTTCTCTTTCCACCTCCTTGATCAACATACCTAGCAGTGTCATTAAAAACTTTA 1792 Query 48402 AACATTGGGACAATACCATTTG-ATATACCATTGGTTCCCGAAATATAA-CTTCCACTAG 48459 | ||| || |||| || |||| ||| ||| || ||||| ||||||| || || | Sbjct 1793 AGCATAGGAACAAGTCCGTTTGCATA-ACCGTTAGTTCCTCTAATATAAGAATCTGCT-G 1850 Query 48460 CTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACC 48519 ||||||||| | ||| | || || |||||||| || || || | |||| Sbjct 1851 CTCTTATATCTGAGACTGATACTCCAATGCCACCTGCGGCCTTGGAGATAACAGCAATTT 1910 Query 48520 GTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAAC 48579 || || || ||| | || ||||||| | ||| ||| ||||| ||||||| |||||| Sbjct 1911 ACTTGAGTGTTTCAAAGATACCTTCTACAGAATCTTCTTTCATAGTTAATAGGAAACAAG 1970 Query 48580 TAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACC 48639 | ||| | || | || |||| || || | ||| |||| |||||| | |||| Sbjct 1971 AACTCATCTAAGGTTTTGGGGTACCTGCGTTGAAAAGTGTAGGAGTAGCATGAGTGAACC 2030 Query 48640 AT--TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTAT 48697 || || || || || | || ||||||| | | | || | ||| || || || Sbjct 2031 ATAATTGACTCAT--TAAATCGTAGGTTTCAAAAGCCGCTTCAAGATCATCTTTTTGGAT 2088 Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTT-GTTATTTATTT 48756 || ||| ||| | ||| | ||| | |||||||||||| | |||||| ||| | ||| Sbjct 2089 GCCAATACTTACTCTCATAAGCATGTGTTGAGGTCTTTCTATAATTTTAGTTCCCTCTTT 2148 Query 48757 TCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 | |||||||| | | |||| | ||| |||||||||| || | ||| Sbjct 2149 T-AAAAGATAAGCTCTTTCTAGAGTTCTAAAACCAAAGTAATCGTA 2193 >seq6480 Length=2904 Score = 300 bits (332), Expect = 2e-76 Identities = 630/929 (68%), Gaps = 16/929 (2%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||||| || ||||||| ||| |||||||||||||||| ||| |||||||| || || Sbjct 1634 AAGTGAGATTGATGCTAAATTGCATACAGCTACCTCATCTGGGGAAGTATATTCAATGAT 1575 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 ||| ||| || ||| | ||||| || || | ||| | | |||| | |||| Sbjct 1574 CTCACAACAAAGGTTAGAGCTCTTGATGGTTCCAAGATTCTTTTAATTACTTTTACTGTT 1515 Query 47996 A-CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||| || ||||||||||| | || ||||||||||| || | |||||| |||| Sbjct 1514 GGCATGA-TCTTTGTAAAGCATGTATGGAGTTCCAGTTTCAATTTAGCTTTCAATAATAG 1456 Query 48055 ATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAG 48114 || ||||| | ||| || ||| ||| | || || ||||||||| ||| Sbjct 1455 CTTCCCAAAGTTTTTGAGCTTTAATAGTTTTTCTGCCGATACCCTCTTGTTCGTATCTAG 1396 Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATTATCTAA-CCCAGGACATTCATTAGGA 48173 | |||| ||| | || || || || | || | | ||| ||| | | |||||| || Sbjct 1395 TGTATAGCTTAACGAACTCTTCTCCGTGGACCTCAAATAAACCCTTGGC-TTCATTGGGG 1337 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 || | || | ||| || ||| || | ||||||| |||||| | ||| || | ||| Sbjct 1336 CAGAATAAGGTCCAGTCTCCATTATCTCTTACTCTTTCCATAAAGAGATCAGGAACCCAC 1277 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA---AGT 48290 | ||| | || | ||| || | |||| |||| || || || ||| |||| || Sbjct 1276 AAAGCAAAGAAAAGATCTCTTGCTCTTTGTTCCTCTTTACCGTGATT---TTTACGGAGC 1220 Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 | || || || | || ||||| ||||||||||||||||| || || | ||| | Sbjct 1219 TATAGGAAATCAAAGATGTCAGCGTGCCATGGTTCTAAATAGATGGCGAAAGATCCTTTT 1160 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 | ||| ||| |||||||||| ||| | |||||| | || | ||||| | ||| || Sbjct 1159 CTCTTACCACCACCTTGATCTACATAACGGGCAGTTTCATTGAAGACTCTCAGCATGGGT 1100 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA 48470 |||| ||||| || ||| || |||||| || || |||| ||||||| || ||| Sbjct 1099 ACAAGGCCATTAGAATGACCGTTTGTTCCCTTGATGTAGGATCCAGTAGCTCTAATGTTA 1040 Query 48471 CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC-ACACCGTTTAAGGGT 48529 || | || || | || || || | ||||| || ||||| | | || || | | Sbjct 1039 TGAACAGCAAGTCCAACTCCTCCAGCACTCTTAGAGATAAGAGCGATATTCTTCAAAG-T 981 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 |||||| || || || |||||| |||| | | | ||||| || |||||| Sbjct 980 ATCATATATACCCATAATTGAATCATCCTTCATCATGAGCAAGAAACAGCTGCTCATTTG 921 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC--T 48647 || | | |||||| | |||||||| || |||| || ||| | |||||| | || | Sbjct 920 AGGTTTAGGAGTTCCGGCATTAAATAGAGTAGGAGTAGCGTGAGTGAACCATCTATCACT 861 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGAT 48707 |||| |||||||||||||| ||||||| ||||| || ||| ||||| | || Sbjct 860 CATAAGG--TTATATGTTTCAATTGCAGAATCAATATCTTCTTTATGAATACCGACTGAA 803 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767 ||||||| | ||| ||||||||||| ||| |||||||| ||| || || | | ||| Sbjct 802 ACACGCAAGAGCATTTATTGAGGTCTCTCAGCAATTTTGCCATTAATCTTAAGTAAATAA 743 Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATA 48796 ||| |||| || |||||||| ||||| || Sbjct 742 GATCTTTCTAAAGTTTTAAAGCCAAAGTA 714 >seq10356 Length=2916 Score = 147 bits (162), Expect = 2e-30 Identities = 720/1133 (64%), Gaps = 45/1133 (4%) Strand=Plus/Minus Query 47697 AATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAAC 47756 || ||||| || ||||||| |||||||| ||||| |||||||| | ||||||||| | Sbjct 1807 AAGGTATCAGCGAATCCTTAAACACCAAGTCCAATGGGTCTATGTCTCTTATTAGAATAT 1748 Query 47757 TCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNN 47816 ||||| || | |||||| | ||| ||| || | ||||| ||| Sbjct 1747 TCAGCCTCCTTGACTGGATAGTAGTTCCCATCAATCACCTTATTCAGATTTTTAGTTATT 1688 Query 47817 NNNNNNACAATTTCT--CTTAATTTATTAAA-----ATCAAACT----TGT-TATTTATA 47864 | ||| | || ||| | |||| |||||||| ||| | ||| | Sbjct 1687 -------CTCTTTGTTACTGAATGAAGTAAATCATAATCAAACTCTCTTGTCTCTTTCTT 1635 Query 47865 -ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||| |||| ||||||| || || | ||||| ||||| || |||| ||| || Sbjct 1634 TACATACCTTGGTAGTGCTACTGAAGCCAAGTTACAAACAGCCACTTCATCAGGAGATGT 1575 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 ||||| | ||||||| ||| | ||| || ||| || || ||||||||||| | || Sbjct 1574 ATATTCAACAATTTCAGTACACAAATTTGAACTTTTTATTGTTCCCAAATTTTGCTAGTT 1515 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | | || || | ||||||||||||||| | ||||| ||||| |||| || || Sbjct 1514 AGACTTTCTATTGCACGTATCCTTGTAAAGCATATAGGGTGTACCAGTCTCTAGTTGTGA 1455 Query 48044 TTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATG 48103 || || || ||| ||| | || || | ||| ||| || || | | Sbjct 1454 CTCTATAATCTATTACCATAGCCATCTTGCTTATATGGTCTTTCTGCCTCTACCTTGTTC 1395 Query 48104 TTCGTA--TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGA 48161 ||| || ||| | || | ||| |||||||| || || | || | || || || Sbjct 1394 TTCATAGCTTTGG--TAGAGCTTGTCAAATTCCTCTCCCCAGGTATCACTCAATCCTGGG 1337 Query 48162 CATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATA 48221 || |||||||| ||||| | | ||| | |||| |||| |||||| |||| || | | Sbjct 1336 CACTCATTAGGGCACATTAGAGTCCAGTGTTCATTCTTTTCTACTCTTCTCATGAAAAGA 1277 Query 48222 TCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCT--TCATTGCCACTA 48278 ||||| ||||| || || ||| || ||||| | || ||| ||||| || || ||| Sbjct 1276 TCTGGGATCCAGAGGGC-ATAGAACAAATCACGAGCTCT--GTTCTCCTCCTTACCATGG 1220 Query 48279 TTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 ||| | | || | ||| ||||| || || ||||||||||| || | ||| | || Sbjct 1219 TTCTTCCTCAACTATAAG-AAGTCGTAGATGTCCGCATGCCATGGCTCAACATAAACAGC 1161 Query 48338 CATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAAC 48397 | | ||| || ||| || |||| || | ||| | ||||| | ||| | || Sbjct 1160 AAAGGCTCCTTTTCTTTTCCCGCCACCTTAGTCGACATAGCGCGCAGTGTCATTAAACAC 1101 Query 48398 TCTTAACATTGGGACAATACCATTTG-ATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 | | | | || || | || | | ||| ||| || || || |||||| || Sbjct 1100 TTTCAGAAGAGGAACTAGTCCTGTGGCATA-ACCGTTTGTGCCTCTAATATAGGAGTCAG 1042 Query 48457 TAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 | || | ||| ||||||| ||| | ||| |||||||| || ||| || || | ||| Sbjct 1041 TCGCACGTATGTTACTAACTGATACACCAATACCACCAGCGGCTTTCGAAATAACCGCAA 982 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 ||| || || ||| | || ||||| | ||| ||| | | | | ||| || | Sbjct 981 TTTATTTCAGTGTTTCAAATATGCCTTCAACTGAATCTTCTTTAGTCGTAAGTAGGAAGC 922 Query 48577 AACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAA 48636 || | ||||| || | || || ||||| || | || |||| |||||| ||| Sbjct 921 AAGAACTCATTTATGGTTTTGGTGTACCAGAATTGAAGAGAGTGGGAGTAGCATGAGTAA 862 Query 48637 ACCA----TTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGA 48692 | | || ||| |||| | | ||| || |||| | || || | || | | Sbjct 861 AGAAGAGGTTGCTC--ATAAGA--TCATAGGTCTCAAAGGCTGACTCCAAGTCTTCCTTA 806 Query 48693 TGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT---TA 48749 || ||||| || ||| | ||| | ||||| ||||||||| |||| || ||||| | Sbjct 805 TGAATACCAATGCTTACCCTCATAAGCATATGTTGAGGTCTCTCAATAACTTTGTGACCA 746 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || ||| | | ||| | | |||| | ||| | | |||||||||| ||| Sbjct 745 TTCTCTTTTAGTAAATAGGCTCTTTCTAGAGTTCTGTATCCAAAATAGTCGTA 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561930393693240