Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq19711 100 2e-16 seq20137 98.7 8e-16 seq5918 93.3 4e-14 >seq19711 Length=592 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||| || || || || | || || || ||||| ||| ||| || |||||| Sbjct 368 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGATGTTGAGCCTTCA 427 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||| || || | ||| |||||| Sbjct 428 GATACCATTGAGAATGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 487 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||||||||| || || || |||||||||||| | ||| | | || || || Sbjct 488 CAAAGACTTATCTTCGCCGGAAAGCAATTGGAAGATGGAAGAACACTTTCTGACTACAAT 547 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGA 28778 |||||||| ||||| ||||| ||| |||| || ||| | ||||| Sbjct 548 ATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGACTTAGAGGA 592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 |||| ||| |||| || || ||||| | || || ||||| || ||| || |||| Sbjct 135 TAAAGATGTAAATCTTCGTTAAAACCCTTACTGGCAAAACTATCACCTTGGACGTTGAAC 194 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 | ||||| || | | | | ||| || ||| ||||| || || | || | Sbjct 195 CCTCAGACACCATTGAAAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATCCCTCCCG 254 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||||||||| ||||| || || ||| || | ||||| | |||| | ||| | Sbjct 255 ATCAACAGAGACTCATCTTCGCTGGAAAATAACTCGAAGACGGAAGAACTCTCAGCGACT 314 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | ||||| ||||||||||| ||||| ||| |||| | ||||| ||||||| || Sbjct 315 ACAACATCCAAAAAGAATCAACTCTTCACTTGGTTCTTAGATTGAGAGGAGGTAT 369 >seq20137 Length=989 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || ||||||||||| ||| || || || || Sbjct 392 ATGCAAATCTTTGTTAAGACCCTCACTGGTAAAACCATCACCTTAGATGTTGAGCCCTCT 333 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || || |||||||| ||| | ||| |||||| Sbjct 332 GACACAATCGAGAATGTTAAGGCCAAGATTTAGGACAAAGAAGGAATTCCCCCCGATCAA 273 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||||| || || ||||| | |||||| || ||| | | || || ||| Sbjct 272 TAGAGACTTATCTTCGCTGGTAAACAGCTAGAAGATGGTAGAACCTTATCTGACTACAAC 213 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||| || || || || ||| |||| |||||| | |||| || Sbjct 212 ATTCAAAAGGAGTCAACCCTCCACTTGGTCTTAAGACTCAGAGGTGG 166 >seq5918 Length=2920 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACG--GAAC 28608 |||||| | ||||| || || || || ||||| || || ||||| | | ||| |||| Sbjct 2821 AAAATGTAGATATTCGTCAAGACTTTGACGGGCAAGACGATTACT--CTAGACGTTGAAC 2764 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 | || || || | | | | ||| || || |||||||| ||| | ||| | Sbjct 2763 CCTCTGACACCATAGAGAACGTGAAGGCCAAGATTCAAGACAAAGAAGGAATCCCCCCTG 2704 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||||||||| |||||||| || || ||||||||||| | ||| || | || | Sbjct 2703 ATCAACAGAGACTGATCTTTGCAGGAAAGTAATTGGAAGATGGAAGAACCTTGTCTGACT 2644 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | || || ||||| ||||| ||||| || |||| || ||| | |||| || Sbjct 2643 ACAATATCCAAAAGGAATCCACTCTCCATTTGGTCTTGAGACTCAGAGGTGG 2592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425273157288189