Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6480 215 3e-51 seq16451 203 2e-47 seq10356 120 2e-22 >seq6480 Length=2904 Score = 215 bits (238), Expect = 3e-51 Identities = 445/647 (69%), Gaps = 15/647 (2%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCA-ACTTTCTCCATAAATAAATCTG 25946 ||| || |||||||| ||| || |||| | ||| ||| | |||||||| | ||| | Sbjct 1343 ATTGGGGCAGAATAAGGTCCAGTCTCCATTAT-CTCTTACTCTTTCCATAAAGAGATCAG 1285 Query 25947 GAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTT 26006 ||| ||||| ||| | || | |||||| ||||| ||| ||||| |||||||| || Sbjct 1284 GAACCCACAAAGCAAAGAAAAGATCTCTTGCTCTTTGTTCCTCTTTACCGTGATTTTTAC 1225 Query 26007 TTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 || | || ||||||||| || || | ||||||||||||||||||||| || ||| | Sbjct 1224 GGAGCTATAGGAAATCAAAGATGTCAGCGTGCCATGGTTCTAAATAGATGGCGAAAGATC 1165 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 ||||||| || || |||||||||||||| || | |||||||||||||| ||| ||| || Sbjct 1164 CTTTTCTCTTACCACCACCTTGATCTACATAACGGGCAGTTTCATTGAAGACTCTCAGCA 1105 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 | || || | ||| | ||| |||||||| | | || | |||||| || | ||||| Sbjct 1104 TGGGTACAAGGCCATTAGAATGACCGTTTGTTCCCTTGATGTAGGATCCAGTAGCTCTAA 1045 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGC-ACAATCTGAA 26245 | | ||| || || || | ||| ||||| | || || ||| || | | ||| | Sbjct 1044 TGTTATGAACAGCAAGTCCAACTCCTCCAGCACTCTTAGAGATAAGAGCGATATTCTTCA 985 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | ||||| | || || | || |||| | |||| || | | || || || | | Sbjct 984 A-AGTATCATATATACCCATAATTGAATCATCCTTCA-TCATGAGCAAGAAACAGCTGCT 927 Query 26306 -AATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCC 26364 | ||| | | || ||||| | |||||||| || || ||||| ||||| | ||| Sbjct 926 CATTTGAGGTTTAGGAGTTCCGGCATTAAATAGAGTAGGAGTAGCGTGAGTGAACCATCT 867 Query 26365 TTCACTCA-AAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAA 26423 ||||||| ||| | |||| ||||||| | ||| |||| | ||| || | | Sbjct 866 ATCACTCATAAGGT-TATATGTTTCAATTGCAGAATCAATATCTTCTTTATGAATACCGA 808 Query 26424 TAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCC--GCATCTCT 26481 | | || ||| |||||||||| ||| || | ||| || |||| | Sbjct 807 CTGAAACACGCAAGAGCATTTATTGAGGTCTCTCA---GCAAT-TTTGCCATTAATCT-T 753 Query 26482 AATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGAT 26528 || ||||||||| ||||||||||||| || ||||| ||||||| || Sbjct 752 AAGTAAATAAGATCTTTCTAAAGTTTTAAAGCCAAAGTAATCATAAT 706 >seq16451 Length=2876 Score = 203 bits (224), Expect = 2e-47 Identities = 444/657 (68%), Gaps = 15/657 (2%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| ||||| | || | ||| || |||| | || ||| | | |||||| | |||||| Sbjct 1558 ATTAGGACACATTAGAGTCCATTCTTCATTCTTTTCGACTCTTTTCATAAAAAGATCTGG 1617 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 ||||| | |||||| |||| |||||| ||||| |||||||||| || ||||||||| | Sbjct 1618 GATCCAGAGTGCATAGAATAGATCTCTGGCTCTATTTTCTTCTTTGCCATGATTCTTTCT 1677 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 || | | ||| ||| ||||||| | ||||| ||||||| ||||| |||||| || Sbjct 1678 AAGTTAAAGGAAGTCATAAATATCAGCATGCCAAGGTTCTACATAGACAGCAAATGCTCC 1737 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 |||||| ||||| || |||||||| || || || ||||| ||||| |||||||| | ||| Sbjct 1738 TTTTCTCTTTCCACCTCCTTGATCAACATACCTAGCAGTGTCATTAAAAACTTTAAGCAT 1797 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187 ||||| | ||| ||| | | ||||| || | ||| | || ||| | ||| || Sbjct 1798 AGGAACAAGTCCGTTTGCATAACCGTTAGTTCCTCTAATATAAGAATCTGCTGCTCTTAT 1857 Query 26188 ATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246 ||| |||| ||| | || || ||||| || || || ||| | ||| | | Sbjct 1858 ATC-TGAGACTGATACTCCAATGCCACCTGCGGCCTTGGAGATAACAGCAATTTACTTGA 1916 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 ||| || || || |||| || ||| ||||||| ||||| ||||||||| | Sbjct 1917 GTGTTTCAAAGATACCTTCTACAGAATCTTCTTTCATAGTTAATAGGAAACAAGAAC-TC 1975 Query 26307 ATTGCGAATGAGTTG---TTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATC 26363 || | || | ||| | |||| || || | ||| || ||||||||||| | || Sbjct 1976 AT--CTAAGGTTTTGGGGTACCTGCGTTGAAAAGTGTAGGAGTAGCATGAGTGAACCATA 2033 Query 26364 CTTCACTCA--AAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTC 26421 || ||||| || | || ||||||| | | | || | || | || | | Sbjct 2034 ATTGACTCATTAAATCG--TAGGTTTCAAAAGCCGCTTCAAGATCATCTTTTTGGATGCC 2091 Query 26422 AATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCT 26481 |||| | ||| | ||| | |||||||| ||| || | ||| || || ||| | Sbjct 2092 AATACTTACTCTCATAAGCATGTGTTGAGGTCTTTCTATAATTTTAGTTCCC---TCTTT 2148 Query 26482 AATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCTCT 26538 | | ||||| | |||||| |||| | || ||||| ||||| | ||| | ||||| Sbjct 2149 TAAAAGATAAGCTCTTTCTAGAGTTCTAAAACCAAAGTAATCGTAGTTGTAGTCTCT 2205 >seq10356 Length=2916 Score = 120 bits (132), Expect = 2e-22 Identities = 299/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 25914 CATTTTGCTCAACT-TTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCT 25972 |||| | || ||| ||||| || || | |||||| ||||| | ||||| || ||||| Sbjct 1305 CATTCTTTTCTACTCTTCTC-ATGAAAAGATCTGGGATCCAGAGGGCATAGAACAAATCA 1247 Query 25973 CTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCT 26032 | ||||| | || || || || || ||||| | | | |||||| || | || || Sbjct 1246 CGAGCTCTGTTCTCCTCCTTACCATGGTTCTTCCTCAACTATAAGAAGTCGTAGATGTCC 1187 Query 26033 GAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCT 26092 | |||||||| || | ||| | |||||| ||||||||||| || ||||||| || Sbjct 1186 GCATGCCATGGCTCAACATAAACAGCAAAGGCTCCTTTTCTTTTCCCGCCACCTTAGTCG 1127 Query 26093 ACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCG 26152 || || | ||||| ||||| || ||||||| | ||||||| ||| || | | | ||| Sbjct 1126 ACATAGCGCGCAGTGTCATTAAACACTTTCAGAAGAGGAACTAGTCCTGTGGCATAACCG 1067 Query 26153 TTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGA-ATACCGATTCC 26211 ||||||| ||| | ||| | |||| | || | | | ||| | ||| || || Sbjct 1066 TTTGTGCCTCTAATATAGGAGTCAGTCGCACGTATGTTACTAAC-TGATACACCAATACC 1008 Query 26212 ACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCT 26271 |||||| ||| |||||| | ||| | | | ||| || || || |||| | Sbjct 1007 ACCAGCGGCTTTCGAAATAACCGCAATTTATTTCAGTGTTTCAAATATGCCTTCAACTGA 948 Query 26272 ATCACCTTTCATTCCTAA-TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAAT 26330 ||| |||| | || ||| || || |||||| | || | | | ||| || |||| Sbjct 947 ATCTTCTTT-AGTCGTAAGTAGGAAGCAAGAACTCATTTATGGTTTTGGTGTACCAGAAT 889 Query 26331 TAAATAATGTCGGTGTAGCATGAGTA 26356 | || | || || |||||||||||| Sbjct 888 TGAAGAGAGTGGGAGTAGCATGAGTA 863 Score = 82.4 bits (90), Expect = 4e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 |||||| |||| | |||||||||| | | | || || || | ||||| || || Sbjct 2177 AAATTCACCAGCAAGAACTCTTCTTGTGTAGACATTAGAGGTATAAGGTTCGAATGCCTC 2118 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 ||| ||||| | |||||||||||| || ||||||||||| || | || || ||||| Sbjct 2117 ATTGTTTCCAAGGATTTGAGAAGTTGAGGCTGTTGGCATAGGAGCAACCAAGAGAGAATT 2058 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 ||| ||||||||| | || || | | | ||| |||||||| Sbjct 2057 TCTTGCACCATATTTCATAACATCCTACCTAAGTTTGTCCCAATC 2013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252961696060325