Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq23162 174 2e-38 seq7281 98.7 1e-15 seq23963 95.1 1e-14 >seq23162 Length=1931 Score = 174 bits (192), Expect = 2e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 124292 GCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCT 124351 || || |||||||| | |||||||||||||||||| |||||||| || || || || ||| Sbjct 1714 GCGTATTGGAAGATTAAACGACCAAAGTAACCGTGAGCTGCTACAATATTATAAGTCTCT 1655 Query 124352 TCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATT 124411 |||||||| ||||| ||||| || || || | || |||||||| | ||| Sbjct 1654 TCTTCTTGGCCGAAACGGTAACCCGCATTAGCAGATTCGTTTTCAGTTGTTTCGCGAATT 1595 Query 124412 AGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCT 124471 | ||| || ||||| || ||||||||||||||||| || | || || || || | ||| Sbjct 1594 AAAGATGAAGTAACTAGCGAACCATGCATTGCTGAAAACAGCGAACCGCCAAATACACCT 1535 Query 124472 GCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || || ||| ||||||||| |||||||| ||||| |||||||| || ||||| || Sbjct 1534 GCAACACCTAACATGTGGAACGGATGCATAAGAATATTATGCTCGGCCTGGAATAC 1479 >seq7281 Length=3367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 139288 AGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGT 139347 |||| | || || |||||||||| |||| ||| || || ||||| || || ||||| | Sbjct 1960 AGAAAGCTGAAATGTTTGCGAGCAAAGCTTATGCGGTACATATGTTGCTTGTAGCTTTAT 2019 Query 139348 CTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGC 139407 ||||||||||||||| ||||| ||||| || | | ||||||||| | | || | | Sbjct 2020 CTCTTCTAATATGCTATTCTCTTGTTTGAAGAGACATTCTGTATGCTAGGTCTCCAT-GT 2078 Query 139408 TG-TCCACTGACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTT 139466 || || ||| |||| | | || || ||||||||||| | | || || Sbjct 2079 TGATCTTTAGACACTCCTATTAAACGACCTGGCATCTTTCTCTTGAATTCATC----CTT 2134 Query 139467 GCAA---AGA-ATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTTTGCAT 139522 |||| | | | ||| || |||||||| ||| ||||||| | |||||| ||||| | Sbjct 2135 GCAAGCCATATAACCAGGGTGGGGACCTCCATATGCCATAGGTACACCAAATCTTTGGAC 2194 Query 139523 ACTACCTACAGCAATATCA 139541 | || ||||| |||||| Sbjct 2195 AGATCCGACAGCGATATCA 2213 >seq23963 Length=704 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124042 AGCAGATGCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACC 124101 ||| || |||| |||||||||||||| ||||| || | ||| ||||| ||||||||||| Sbjct 564 AGCTGAAGCTAAATCTAGTGGGAAGTTATGTGCGTTACGTTCGTGCATTACTTCCATACC 505 Query 124102 CAAGTTTGCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAAC 124161 ||||| || | ||| | || ||| ||||||| | | || | || ||| || Sbjct 504 TAAGTTAGCACGGTTGATAATGTCAGCCCATGTATTTAATACACGGCCTTGAGAATCTAC 445 Query 124162 AACTGATTGGTTAAAGTTGA 124181 |||||||||||| ||||||| Sbjct 444 AACTGATTGGTTGAAGTTGA 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578814633145320