Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq20137 123 4e-23 seq20138 114 2e-20 seq5918 114 2e-20 seq19711 113 8e-20 seq10285 93.3 8e-14 >seq20137 Length=989 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | || || |||| || | || | ||||| | || ||| Sbjct 385 ATTTGCATACCACCTCTTAGTCTGAGGACCAAGTGAAGAGTTGATTCTTTCTAGATGTTA 444 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| ||| || | ||| |||||||| ||||| |||||||||||| Sbjct 445 TAGTCAGAGAGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGA 504 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||||||||||| || || | || | |||| ||| || || | Sbjct 505 TCGGGTGGGATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTA 564 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || ||||| ||||| || || || | || || || || || | ||| Sbjct 565 GGCTCAACGTCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 620 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | || | |||| || | || | ||| || ||| || ||||| ||| Sbjct 166 CCACCTCTGAGTCTTAAGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAT 225 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || |||||| ||| |||| ||||| || || || || | ||||| |||||| || || Sbjct 226 AAGGTTCTACCATCTTCTAGCTGTTTACCAGCGAAGATAAGTCTCTATTGATCGGGGGGA 285 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||||||||| || | || |||| || | ||| || || || || | |||||| Sbjct 286 ATTCCTTCTTTGTCCTAAATCTTGGCCTTAACATTCTCGATTGTGTCAGAGGGCTCAACA 345 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| || || |||||||| || || || || ||||| |||||||| Sbjct 346 TCTAAGGTGATGGTTTTACCAGTGAGGGTCTTAACAAAGATTTGCAT 392 >seq20138 Length=732 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| | || || |||| || | || | ||| || ||| || ||||| || Sbjct 136 ACCACCTCTGAGTCTGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGA 195 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | ||||| ||| || | ||| |||||||| ||||| |||||||||||||| || || Sbjct 196 AAGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGTGG 255 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||||||||||| || || | || | |||| ||| || || || |||||| Sbjct 256 GATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCAAC 315 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || | || || || || || | ||| Sbjct 316 GTCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 363 >seq5918 Length=2920 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || || ||||| ||| || |||| ||||| ||||| || | |||| Sbjct 2637 ATATTGTAGTCAGACAAGGTTCTTCCATCTTCCAATTACTTTCCTGCAAAGATCAGTCTC 2696 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || ||||||||||| ||||| || |||| || | || || || Sbjct 2697 TGTTGATCAGGGGGGATTCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTCTCTATGGTG 2756 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||||| |||||||| || || || || || | || || || ||||| | | Sbjct 2757 TCAGAGGGTTCAACGTCTAGAGTAATCGTCTTGCCCGTCAAAGTCTTGACGAATATCTAC 2816 Query 193359 ATTTTA 193364 |||||| Sbjct 2817 ATTTTA 2822 >seq19711 Length=592 Score = 113 bits (124), Expect = 8e-20 Identities = 183/261 (70%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| ||||| |||||||||| ||| |||| || | || | ||||| || || Sbjct 375 ATTTACATACCTCCTCTCAATCTAAGAACCAAGTGAAGAGTTGATTCTTTTTGGATGTTG 316 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| | ||||| || || | || |||||| || || || | |||||||||| Sbjct 315 TAGTCGCTGAGAGTTCTTCCGTCTTCGAGTTATTTTCCAGCGAAGATGAGTCTCTGTTGA 256 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| || || | || | ||| ||| || || || Sbjct 255 TCGGGAGGGATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTTTCAATGGTGTCTGAG 196 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TTT 193363 | ||||| || | || |||||||| || || || ||||| || || |||| ||| ||| Sbjct 195 GGTTCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTTTTAACGAAGATTTACATCTTT 136 Query 193364 A--TTAGTAAAATAATTATTT 193382 | | | || | |||||||| Sbjct 135 AAGTGATTATAGAAATTATTT 115 >seq10285 Length=3207 Score = 93.3 bits (102), Expect = 8e-14 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 193169 CTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAA 193228 ||||||| | ||||||| || | || |||||| ||| ||||||| ||| || ||||| Sbjct 918 CTCTTTATA--TATTATAATCAGCCAAAGTTCTATTATCTTCTAATTATTTCCCTGCAAA 975 Query 193229 AATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 ||| | ||||| |||||||||||| || |||||| ||||||||| Sbjct 976 AATAAGTCTCTATTGATCAGGAGGGATACCTTCTGCATCTTGTAT 1020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899368860939120