Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq20137 109 8e-19 seq10285 100 4e-16 seq20138 95.1 2e-14 seq15980 86.0 9e-12 >seq20137 Length=989 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| | || || |||| || ||||||||||| ||||| || | || || || | | Sbjct 620 ATGTAGATCTTCGTTAAGACTTTGACTGGAAAGACTATCACTCTTGACGTTGAGCCTAGT 561 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || ||| || ||||||||||||| || || || || ||| Sbjct 560 GACACCATTGAAAATGTCAAGGCTAAGATCTAAGATAAAGAAGGTATCCCACCCGATCAA 501 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||||| ||||| || || ||| ||||| | || || ||||| Sbjct 500 CAGAGATTGATTTTCGCCGGAAAGCAACTTGAGGATGGAAGAACCCTCTCTGACTATAAC 441 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || | ||||| | || ||||| || || | ||| ||||||| ||| Sbjct 440 ATCTAGAAAGAATCAACTCTTCACTTGGTCCTCAGACTAAGAGGTGGT 393 >seq10285 Length=3207 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 ||||||||| |||||| || ||||| || ||| | ||| | |||| ||| || || | Sbjct 1020 ATACAAGATGCAGAAGGTATCCCTCCTGATCAATAGAGACTTATTTTTGCAGGGAAATAA 961 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTA 156029 | ||||||| |||||||| | ||||||||||||| | ||| | | ||||||||| Sbjct 960 TTAGAAGATAATAGAACTTTGGCTGATTATAATATATAAAGAGATTCAAGACTTCATTTA 901 Query 156030 GTGTTAAGATTAAGAGGCGG 156049 |||||||| ||||||| || Sbjct 900 GTGTTAAGGCTAAGAGGTGG 881 >seq20138 Length=732 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| | || || |||| || ||||||||||| ||||| || | || || || | | Sbjct 363 ATGTAGATCTTCGTTAAGACTTTGACTGGAAAGACTATCACTCTTGACGTTGAGCCTAGT 304 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || ||| || ||||||||||||| || || || || ||| Sbjct 303 GACACCATTGAAAATGTCAAGGCTAAGATCTAAGATAAAGAAGGTATCCCACCCGATCAA 244 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||||| ||||| || || ||| ||||| | || || || || Sbjct 243 CAGAGATTGATTTTCGCCGGAAAGCAACTTGAGGATGGAAGAACCCTTTCTGACTACAAC 184 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | || || || || || | ||| | ||||| ||| Sbjct 183 AT-TCAAAAGGAGTCAACCCTCCACTTGGTTCTCAGACTCAGAGGTGGT 136 >seq15980 Length=3053 Score = 86.0 bits (94), Expect = 9e-12 Identities = 173/250 (69%), Gaps = 15/250 (6%) Strand=Plus/Plus Query 155819 TAAAA--TGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACA--TTA--GAAGT 155872 ||||| || |||||||| | ||||| || ||||||||||| || || ||| | | | Sbjct 2166 TAAAACTTGGAAATATTTGTAAAAACTTTAACTGGAAAAACAATCACTATTTACTGCAAT 2225 Query 155873 CGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAA-TACAAGATAAAGAAGGCATAC 155931 || | ||||| ||| || | | |||| |||| | | ||||||||||| || | Sbjct 2226 GGAGG----TGATACAATTG-AATCATTAAAAGAAAAAGTTTAGGATAAAGAAGGAATTC 2280 Query 155932 CTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTAT 155991 ||||||| ||| ||||| |||||| ||| || | ||| | ||| || | || || Sbjct 2281 CTCCAGATCAATAAAGAATGATTTTTGCTGGAATGCAATTAGAAAATCACTTCACCTTGG 2340 Query 155992 CAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT---AAGAGGCG 156048 || |||| || | || || | || ||||||||||| |||||| | | |||||| Sbjct 2341 ACGAATATAGAATTTAAAATGAATCTACACTTCATTTAGTTTTAAGACTCAGAGGAGGCG 2400 Query 156049 GTGTAAAATT 156058 ||| | |||| Sbjct 2401 GTGGAGAATT 2410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731639712975600