Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq5918 141 2e-28 seq20138 114 3e-20 seq20137 114 3e-20 seq10285 96.9 7e-15 >seq5918 Length=2920 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | || || ||||| | ||| | || || |||||| || ||||| Sbjct 2592 CCACCTCTGAGTCTCAAGACCAAATGGAGAGTGGATTCCTTTTGGATATTGTAGTCAGAC 2651 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || |||| | |||| ||||||| || || |||||||| | ||||||||||||||| || Sbjct 2652 AAGGTTCTTCCATCTTCCAATTACTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGGGGG 2711 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| ||||| || || || || || ||| | || || | ||| || Sbjct 2712 ATTCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTCTCTATGGTGTCAGAGGGTTCAACG 2771 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 ||||||||||| || || || || || || || | ||||||| ||||||| Sbjct 2772 TCTAGAGTAATCGTCTTGCCCGTCAAAGTCTTGACGAATATCTACATTTTA 2822 >seq20138 Length=732 Score = 114 bits (126), Expect = 3e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||||||| | || || || || | || | ||||| |||||| |||||| Sbjct 362 ATACCTCCTCTAAGTCTCAAGACCAAGTGAAGGGTTGATTCTTTCTGGATATTGTAATCA 421 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| |||| | || || |||| || ||||||||||| | ||||| |||||||||| Sbjct 422 GATAGGGTTCTGCCGTCTTCTAATTACTTTCCAGCAAAGATGAGTCTCTATTGATCAGGT 481 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || || || |||| || || | ||| Sbjct 482 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGATGGCTCT 541 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || |||||||| || || || || | |||||| | || || | |||||| Sbjct 542 ACATCGAGAGTAATAGTCTTTCCGGTAAGTGTTTTTACGAAGATTTACATTTT 594 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| || | | || || || | || | ||| ||| || || || || |||| Sbjct 136 ACCACCTCTGAGTCTGAGAACCAAGTGGAGGGTTGACTCCTTTTGA-ATGTTGTAGTCAG 194 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | |||| | |||| || | ||| || || || || || |||||||||||||| |||| Sbjct 195 AAAGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGTG 254 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || ||||||||||||| || ||| || ||||| || | || | || | Sbjct 255 GGATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCAA 314 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || ||||| || || || ||||| || || |||| || |||| ||| Sbjct 315 CGTCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 363 >seq20137 Length=989 Score = 114 bits (126), Expect = 3e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||||||| | || || || || | || | ||||| |||||| |||||| Sbjct 619 ATACCTCCTCTAAGTCTCAAGACCAAGTGAAGGGTTGATTCTTTCTGGATATTGTAATCA 678 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| |||| | || || |||| || ||||||||||| | ||||| |||||||||| Sbjct 679 GATAGGGTTCTGCCGTCTTCTAATTACTTTCCAGCAAAGATGAGTCTCTATTGATCAGGT 738 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || || || |||| || || | ||| Sbjct 739 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGATGGCTCT 798 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || |||||||| || || || || | |||||| | || || | |||||| Sbjct 799 ACATCGAGAGTAATAGTCTTTCCGGTAAGTGTTTTTACGAAGATTTACATTTT 851 Score = 113 bits (124), Expect = 9e-20 Identities = 191/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 192270 AAATTAATAGATATAGAGTATACT-TTTTAGTTTAATA---ATACCACCTCTAAGACGTA 192325 ||||||||| ||| || |||| |||| |||| | | |||||||| || | || Sbjct 122 AAATTAATATATAAGGATTATAAAGTTTTTGTTTGCTTCAGAAGCCACCTCTGAGTCTTA 181 Query 192326 ATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 | || || || | || | ||| ||| || || || || |||||||| |||| |||| Sbjct 182 AGACCAAGTGGAGGGTTGACTCCTTTTGA-ATGTTGTAGTCAGATAAGGTTCTACCATCT 240 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 || | ||||||||||| ||||| | ||||| |||||| || || ||||||||||| || Sbjct 241 TCTAGCTGTTTACCAGCGAAGATAAGTCTCTATTGATCGGGGGGAATTCCTTCTTTGTCC 300 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 | || || || ||||| || | || || | || || |||| || |||||| Sbjct 301 TAAATCTTGGCCTTAACATTCTCGATTGTGTCAGAGGGCTCAACATCTAAGGTGATGGTT 360 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| | || |||| ||| || ||||| Sbjct 361 TTACCAGTGAGGGTCTTAACAAAGATTTGCAT 392 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || | | || || || | ||| | ||||| |||| ||||| ||| Sbjct 391 ATACCACCTCTTAGTCTGAGGACCAAGTGAAGAGTTGATTCTTTCTAGATGTTATAGTCA 450 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | ||| || || || || || |||||||||||||| ||| Sbjct 451 GAGAGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGT 510 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||||| || ||| || ||||| || | || | || Sbjct 511 GGGATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCA 570 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || || ||||| || || |||| || |||| ||| Sbjct 571 ACGTCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 620 >seq10285 Length=3207 Score = 96.9 bits (106), Expect = 7e-15 Identities = 111/147 (76%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGT----AGCCTCTTTAGAGATATTATA 192362 || |||||||| || | ||| |||||||| |||| | ||||||| | ||||||| Sbjct 878 ATTCCACCTCTTAGCCTTAACACTAAATG--AAGTCTTGAATCTCTTTATA--TATTATA 933 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||||| || |||| | ||| || |||| ||| || ||||| || | ||||| |||||| Sbjct 934 ATCAGCCAAAGTTCTATTATCTTCTAATTATTTCCCTGCAAAAATAAGTCTCTATTGATC 993 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTAT 192449 ||| || || |||||| ||||||||| Sbjct 994 AGGAGGGATACCTTCTGCATCTTGTAT 1020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984159726812850