Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5918 129 1e-24 seq20137 104 4e-17 seq20138 91.5 3e-13 seq10285 87.8 3e-12 >seq5918 Length=2920 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| |||| || || ||||| | ||| | || || ||||| || || || Sbjct 2592 CCACCTCTGAGTCTCAAGACCAAATGGAGAGTGGATTCCTTTTGGATATTGTAGTCAGAC 2651 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | | || ||||||| || || ||||| || | ||||||||| ||||| || Sbjct 2652 AAGGTTCTTCCATCTTCCAATTACTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGGGGG 2711 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||| ||||| || || || || || ||| || || || | ||| || Sbjct 2712 ATTCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTCTCTATGGTGTCAGAGGGTTCAACG 2771 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||||||||| || || || || || || || | |||||||| ||||||| Sbjct 2772 TCTAGAGTAATCGTCTTGCCCGTCAAAGTCTTGACGAATATCTACATTTTA 2822 >seq20137 Length=989 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| | || || || | ||| | ||||| | || ||||| || Sbjct 391 ATACCACCTCTTAGTCTGAGGACCAAGTGAAGAGTTGATTCTTTCTAGATGTTATAGTCA 450 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || || | ||| || || || ||||| ||||||||||| || ||| Sbjct 451 GAGAGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGT 510 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||||| || ||| || ||||| || || || | || Sbjct 511 GGGATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCA 570 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || ||||| || || |||| ||| |||| ||| Sbjct 571 ACGTCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 620 Score = 100 bits (110), Expect = 5e-16 Identities = 187/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 171803 AAATTAATAGATATAGAGTATACT-TTTTAGTTT-CATAATA--CCACCTCTAAGTCGTA 171858 ||||||||| ||| || |||| |||| |||| | | | | |||||||| |||| || Sbjct 122 AAATTAATATATAAGGATTATAAAGTTTTTGTTTGCTTCAGAAGCCACCTCTGAGTCTTA 181 Query 171859 ATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCAT 171918 | || || || | || | ||| || ||| || || || ||||| | || | || | Sbjct 182 AGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGATAAGGTTCTACCATCTT 241 Query 171919 CCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTT 171978 | | ||||||||||| || || | ||||| ||| || || || ||||||||||| || | Sbjct 242 CTAGCTGTTTACCAGCGAAGATAAGTCTCTATTGATCGGGGGGAATTCCTTCTTTGTCCT 301 Query 171979 GTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTT 172038 || || || ||||| || || || || | || || |||| || ||||||| Sbjct 302 AAATCTTGGCCTTAACATTCTCGATTGTGTCAGAGGGCTCAACATCTAAGGTGATGGTTT 361 Query 172039 TACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| | || |||| || || ||||| Sbjct 362 TACCAGTGAGGGTCTTAACAAAGATTTGCAT 392 >seq20138 Length=732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| |||| | || || || | || | ||| || ||| || || || || Sbjct 136 ACCACCTCTGAGTCTGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGA 195 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | | || || | ||| || || || ||||| ||||||||||| || ||||| Sbjct 196 AAGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGTGG 255 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||||||||||| || ||| || ||||| || || || | || || Sbjct 256 GATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCAAC 315 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || ||||| || || |||| ||| |||| ||| Sbjct 316 GTCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 363 >seq10285 Length=3207 Score = 87.8 bits (96), Expect = 3e-12 Identities = 109/147 (74%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGT----AGCCTCTTTAGAAATATTATA 171895 || |||||||| || | ||| |||||||| |||| | ||||||| | ||||||| Sbjct 878 ATTCCACCTCTTAGCCTTAACACTAAATG--AAGTCTTGAATCTCTTTATA--TATTATA 933 Query 171896 ATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 ||| | |||| || | || || |||| ||| || |||||||| | ||||| ||| || Sbjct 934 ATCAGCCAAAGTTCTATTATCTTCTAATTATTTCCCTGCAAAAATAAGTCTCTATTGATC 993 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTAT 171982 ||| || || |||||| ||||||||| Sbjct 994 AGGAGGGATACCTTCTGCATCTTGTAT 1020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904848721147800