Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq16451 168 2e-36 seq6480 150 5e-31 seq18645 111 5e-19 seq14610 98.7 3e-15 seq11164 87.8 5e-12 seq11167 84.2 6e-11 >seq16451 Length=2876 Score = 168 bits (186), Expect = 2e-36 Identities = 568/873 (65%), Gaps = 16/873 (2%) Strand=Plus/Plus Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTC 155533 ||||||| |||| |||||| || || |||||||| || | | ||||| || || Sbjct 1156 TGGGTAATAATTATTATCAATTATCTTGTTTAAATTCTTAGTAATTCTTTTGGTAACATC 1215 Query 155534 -TGCTAATTTCACATAGTCAAATGTTTTATCCTCA---TTTACAAACATACCAAGACCAA 155589 ||| || ||| |||||||| || |||| || ||||||||| | | | | Sbjct 1216 ATGC-AACTTCTCATAGTCATATTCTTTAGTTTCTGTTTTTACAAACCTGTTTAAGGCTA 1274 Query 155590 TAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCACAG 155648 | || || ||||||||||| || || | || | | | ||||||||||| ||| Sbjct 1275 TTGAGGCTAGATTACATACAGCTACTTCATCTGGGCTAG-TATATTCTACAATTTCAGTA 1333 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 || || || ||||| || ||| || | || | | |||||||| |||||||||| | Sbjct 1334 CAGAGATTTGAACTTTTTATGCACCCCAGGTTTTGTTAATTAGATTTTCTGTTACAAGTA 1393 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAG 155768 || |||||||| || ||||| ||||| ||||| || || | || | ||||| ||| Sbjct 1394 TCTTTGTATAGCATATATGGAGTTCCAGTCTCAATTTGAGATTCTACAATCTAGCTCCAT 1453 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGC 155828 | | || || || ||| || ||| || || |||||||| ||| || Sbjct 1454 AACCATCTAGCCTTTATAGTCTTTCTGCCTCTTCCCTCTTCTTCATATTTTTCATAAAGT 1513 Query 155829 GTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGC 155888 | | | || || || | || | ||| || ||||||| || || || | || Sbjct 1514 TTCTCGAATTCTTCTCCCCAGCATGTAGTCAAACCTGGGCACTCATTAGGACACATTAGA 1573 Query 155889 GACCAAATTTTATTACCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCAT 155946 | ||| || ||| | || || | | |||||| | ||| ||| | |||| Sbjct 1574 GTCCATTCTTCATT--CTTTTCGACTCTTTTCATAAAAAGATCTGGGATCCAGAGTGCAT 1631 Query 155947 AGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATT 156006 |||| || || || || | || || | ||| |||||||| | || | | ||| | Sbjct 1632 AGAATAGATCTCTGGCTCTATTTTCTTCTTTGCCATGATTCTTTCTAAGTTAAAGGAAGT 1691 Query 156007 CCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCA- 156065 | | |||||||| ||| || || | ||| | |||||| || || ||||| ||| Sbjct 1692 CATAAATATCAGCATGCCAAGGTTCTACATAGACAGCAAATGCTCCTTTTCTCTTTCCAC 1751 Query 156066 --CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCAT 156123 || ||||| ||||||| |||||| | ||| || || |||||||||| || || | Sbjct 1752 CTCCTTGATCAACATACCTAGCAGTGTCATTAAAAACTTTAAGCATAGGAACAAGTCCGT 1811 Query 156124 TGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG-T 156182 | | | || || ||||| | ||||| ||| | | || | | | | ||| || | Sbjct 1812 TTGCATAACCGTTAGTTCCTCTAATATAAGAATCTGCTGCTCTTATA-TCTGAGACTGAT 1870 Query 156183 AGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242 | |||||| ||||||| || || || ||| || ||| | || | || ||| Sbjct 1871 ACTCCAATGCCACCTGCGGCCTTGGAGATAACAGCAATTTACTTGAGTGTTTCAAAGATA 1930 Query 156243 CCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT 156302 ||||| | |||||| |||| ||| | || ||| | || ||||| | | |||| ||| Sbjct 1931 CCTTCTACAGAATCTTCTTTCATAGTTAATAGGAAACAAGAACTCATCTAAGGTTTTGGG 1990 Query 156303 GTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 || || |||||||| |||||||| || |||||| Sbjct 1991 GTACCTGCGTTGAAAAGTGTAGGAGTAGCATGA 2023 >seq6480 Length=2904 Score = 150 bits (166), Expect = 5e-31 Identities = 463/710 (65%), Gaps = 7/710 (1%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| | |||||||| || |||||||| ||||||||||| || | |||||| | ||| Sbjct 1585 TATTCAATGATCTCACAACAAAGGTTAGAGCTCTTGATGGTTCCAAGATTCTTTTAATTA 1526 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 ||||||||| | ||| ||||| || |||||||| ||||| || || || | Sbjct 1525 CTTTTACTGTTGGCATGATCTTTGTAAAGCATGTATGGAGTTCCAGTTTCAATTTAGCTT 1466 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || | ||| | ||| || | | || ||||| || || | || || Sbjct 1465 TCAATAATAGCTTCCCAAAGTTTTTGAGCTTTAATAGTTTTTCTGCCGATACCCTCTTGT 1406 Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCAC-TCAGTCCAGGGCA 155869 || ||| | | || ||| | | | || || |||| ||| | | || ||| Sbjct 1405 TCGTATCTAGTGTATAGCTTAACGAACTCTTCTCCGTGGACCTCAAATAAACCCTTGGCT 1346 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATC 155929 | || |||||| || | | ||| | |||| | |||| | |||||||| | ||| Sbjct 1345 -TCATTGGGGCAGAATAAGGTCCAGTCTCCATTATCTCTTACTCTTTCCATAAAGAGATC 1287 Query 155930 ACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCT 155988 | |||| | |||| ||||||| || ||||| ||||| ||||| | |||||||| | Sbjct 1286 AGGAACCCACAAAGCAAAGAAAAGATCTCTTGCTCTTTGT-TCCTCTTTACCGTGATTTT 1228 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048 | || |||| || ||| || || |||| || ||| || | ||| || || ||| Sbjct 1227 TACGGAGCTATAGGAAATCAAAGATGTCAGCGTGCCATGGTTCTAAATAGATGGCGAAAG 1168 Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 || || ||||| ||||| ||||||||||| || ||||| | ||||||||| | | Sbjct 1167 ATCCTTTTCTCTTACCACCACCTTGATCTACATAACGGGCAGTTTCATTGAAGACTCTCA 1108 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| || | || ||||| ||| || || ||||| || | || |||| | | Sbjct 1107 GCATGGGTACAAGGCCATTAGAATGACCGTTTGTTCCCTTGATGTAGGATCCAGTAGCTC 1048 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 || ||||||| | ||||||| || || | | ||||| || ||||| | || Sbjct 1047 TAATGTTATGAACAGCAAGTCCAACTCCTCCAGCACTCTTAGAGATAAGAGCGATATTCT 988 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 | | ||||| | ||||| ||| |||||||| | ||| || | | || | Sbjct 987 TCAAAGTATCATATATACCCATAATTGAATCATCCTTCATCATGAGCAAGAAACAGCTGC 928 Query 156286 TTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 | | ||||||| || ||||| || || ||||| ||||| || || ||| Sbjct 927 TCATTTGAGGTTTAGGAGTTCCGGCATTAAATAGAGTAGGAGTAGCGTGA 878 >seq18645 Length=3966 Score = 111 bits (122), Expect = 5e-19 Identities = 173/243 (71%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 251475 GAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACC 251534 ||||||||| || |||||||| |||||||| |||||||||||||| || || |||||||| Sbjct 312 GAAGCGAGAGGCTCCGTGTGATATCATACAGTCACGCTCCATTTCTCCAAAGCGAAGACC 371 Query 251535 ACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GATTAACCATAGGACCGATGG 251593 ||||| |||| | || || | || || ||||||| |||| | | ||||| || Sbjct 372 TCCATCACGAGAGCGTCCTTCAGTTGGTTGGCGAGTGAGGATTTA-AGTGGGACCTCTGC 430 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 | ||| ||||||| ||||||||||| |||||||| ||| | | || || | Sbjct 431 CTCTAGAATGAATTTTATCATCGACCATATGCTTAAGACGCTGATAGTAAGTTGGGCCTA 490 Query 251654 TGAAGAT-----GCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTT 251708 |||||| ||||| || | || ||| | | | | |||||||| |||||||| Sbjct 491 GGAAGATCATAACCTCGA--GC---TTCTTACCATTGAAACCATTATACATGACTTCGTT 545 Query 251709 TCC 251711 || Sbjct 546 ACC 548 >seq14610 Length=3775 Score = 98.7 bits (108), Expect = 3e-15 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || |||||||| | || | || || ||||| ||||||| | ||| | || | Sbjct 3514 ATTAGTCCACACTTCTAGCATATGTGAACTCTGTAGCAATCAGATACATCAAACAGTCTT 3455 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 | || ||| | || |||||| ||||| ||||||||||| | |||||| || || ||| Sbjct 3454 TCTTTCAAGAATCTAGCTGCACCATGTGATATCATACAATCTCTCTCCATCTCTCCAAAA 3395 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || |||||||| || | | |||||||| | ||| | |||||| | | | | ||| Sbjct 3394 CGTAGACCACCGTCTCTTGATCTACCCTCAGTAGGTTAACGAGTCAAAATTTATGTGGGA 3335 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || | || || ||||||| ||||||||||| || | ||| ||||| | Sbjct 3334 CCTCTTCCACGAGAGTGGATCTTATCACCCACCATATGCTTTAGTCTCTGATAGAAAGTA 3275 Query 251647 GGACCGATGAAGAT 251660 ||||| | |||||| Sbjct 3274 GGACCTAGGAAGAT 3261 >seq11164 Length=3644 Score = 87.8 bits (96), Expect = 5e-12 Identities = 257/384 (67%), Gaps = 14/384 (4%) Strand=Plus/Minus Query 288963 TTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCt 289022 |||||| || || | || |||||||||||| ||||| | | || || ||| Sbjct 2467 TTGATTCAGCGTGTTATCTCTTTCATCATTTCCACCTCCAAATTTGCC---ATGTCTC-- 2413 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 || |||||||||||||| || || ||||| || || | || | |||| || || Sbjct 2412 -TTCTTACCAACAGCATCGATCTCATCAATAAAGATAATGGCAGGGGCTCTTTGCCTTGC 2354 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || || | |||||||| | || || || | ||||| |||| || || || || Sbjct 2353 CTTTTTGAAGAGGTCTCTTACTCTTGAGGCACCCACTCCAACGAACATCTCAACGAAGTC 2294 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| | || | |||| | ||| | || ||||| ||||| || ||| | ||||||| Sbjct 2293 TGAACCAGAGA-TTGATAAGAAGGGAACCCCAGCTTCACCTGCAACAGCCTTAGCCAGAA 2235 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCA 289260 | |||||||| || || |||||||| | |||| | || |||| | || || || | Sbjct 2234 GAGTCTTACCAGTGCCTGGTGGTCCAACCAATAAGGCACCTCTTGGGATTTAAGCACCTA 2175 Query 289261 GCAGACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTT 289319 || | |||||||| |||| ||||| || || || || | || | || ||| |||| Sbjct 2174 GC-TTTTAATATTTCTTAGGG-TCTTTCAAGAAATCAACGAACTCTTGAACCTCA-ATTT 2118 Query 289320 TGCCTCATCACAT-CCTGCTACAT 289342 | || | ||| || ||||||| Sbjct 2117 TAGCTGTTTCCATGCCAGCTACAT 2094 >seq11167 Length=5462 Score = 84.2 bits (92), Expect = 6e-11 Identities = 228/342 (67%), Gaps = 14/342 (4%) Strand=Plus/Minus Query 288963 TTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCt 289022 |||||| || || | || |||||||||||| ||||| | | || || ||| Sbjct 4285 TTGATTCAGCGTGTTATCTCTTTCATCATTTCCACCTCCAAATTTGCC---ATGTCTC-- 4231 Query 289023 ttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 || |||||||||||||| || || ||||| || || | || | |||| || || Sbjct 4230 -TTCTTACCAACAGCATCGATCTCATCAATAAAGATAATGGCAGGGGCTCTTTGCCTTGC 4172 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 || || | |||||||| | || || || | ||||| |||| || || || || Sbjct 4171 CTTTTTGAAGAGGTCTCTTACTCTTGAGGCACCCACTCCAACGAACATCTCAACGAAGTC 4112 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| | |||| | || ||| | || || | || |||||||| || | || || | Sbjct 4111 TGAACCTGATATTGAAAAGAAAGGCACCTTGGACTCACCTGCTACAGCTTTGGCAAGCAT 4052 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 |||||||| || ||||| || |||| ||| |||| | || | | | ||||| | Sbjct 4051 AGTCTTACCACAGCCTGGTGGGCCAACTAAAAGAGCTCCTCTGGGAATTCTAGCCCC--C 3994 Query 289263 AGACTT---ATATTTCTCAGGGCTCTTTAA-AAATTCTACAA 289300 | |||| |||||| | | || ||||||| ||| ||||||| Sbjct 3993 A-ACTTTTGATATTTTTTA-GGATCTTTAAGAAAGTCTACAA 3954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471338785078767