Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq20137 125 6e-24 seq20138 120 3e-22 seq5918 118 1e-21 seq19711 116 3e-21 seq10356 98.7 9e-16 >seq20137 Length=989 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || || || |||||||| || || | || || || || | Sbjct 392 ATGCAAATCTTTGTTAAGACCCTCACTGGTAAAACCATCACCTTAGATGTTGAGCCCTCT 333 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||| | |||||||||||||| || ||||||||| Sbjct 332 GACACAATCGAGAATGTTAAGGCCAAGATTTAGGACAAAGAAGGAATTCCCCCCGATCAA 273 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 | | | ||||| || || |||||||| || ||| |||| | | || || || ||| Sbjct 272 TAGAGACTTATCTTCGCTGGTAAACAGCTAGAAGATGGTAGAACCTTATCTGACTACAAC 213 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTT 24915 ||||||||||| || || || |||||||| || Sbjct 212 ATTCAAAAGGAGTCAACCCTCCACTTGGTCTT 181 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| |||| || | || || || ||||| || || || || || | | Sbjct 620 ATGTAGATCTTCGTTAAGACTTTGACTGGAAAGACTATCACTCTTGACGTTGAGCCTAGT 561 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||| |||| |||||||| || || ||||||||| Sbjct 560 GACACCATTGAAAATGTCAAGGCTAAGATCTAAGATAAAGAAGGTATCCCACCCGATCAA 501 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || ||||| || || || |||||| |||| | | || || |||||| Sbjct 500 CAGAGATTGATTTTCGCCGGAAAGCAACTTGAGGATGGAAGAACCCTCTCTGACTATAAC 441 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || | || ||||| || || |||||||| Sbjct 440 ATCTAGAAAGAATCAACTCTTCACTTGGT 412 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | ||||| | ||||| || ||||| || |||||||| ||||| ||||| |||| | Sbjct 848 ATGTAAATCTTCGTAAAAACACTTACCGGAAAGACTATTACTCTCGATGTAGA-GCCATC 790 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || ||||| Sbjct 789 TGACACTATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCA 730 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 | | | | |||||||| || || | | || || |||| | | || ||||| || Sbjct 729 ATAGAGACTCATCTTTGCTGGAAAGTAATTAGAAGACGGCAGAACCCTATCTGATTACAA 670 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || |||||||| ||| || | | ||||| Sbjct 669 TATCCAGAAAGAATCAACCCTTCACTTGGTCTTGAGACTTAGAGGAGG 622 >seq20138 Length=732 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| ||||||| |||| || | || || || ||||| || || || || || | | Sbjct 363 ATGTAGATCTTCGTTAAGACTTTGACTGGAAAGACTATCACTCTTGACGTTGAGCCTAGT 304 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||| |||| |||||||| || || ||||||||| Sbjct 303 GACACCATTGAAAATGTCAAGGCTAAGATCTAAGATAAAGAAGGTATCCCACCCGATCAA 244 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || ||||| || || || |||||| |||| | | || || || ||| Sbjct 243 CAGAGATTGATTTTCGCCGGAAAGCAACTTGAGGATGGAAGAACCCTTTCTGACTACAAC 184 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| || || || |||||||| Sbjct 183 ATTCAAAAGGAGTCAACCCTCCACTTGGT 155 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | ||||| | ||||| || ||||| || |||||||| ||||| ||||| |||| | Sbjct 591 ATGTAAATCTTCGTAAAAACACTTACCGGAAAGACTATTACTCTCGATGTAGA-GCCATC 533 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || ||||| Sbjct 532 TGACACTATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCA 473 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 | | | | |||||||| || || | | || || |||| | | || ||||| || Sbjct 472 ATAGAGACTCATCTTTGCTGGAAAGTAATTAGAAGACGGCAGAACCCTATCTGATTACAA 413 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || |||||||| ||| || | | ||||| Sbjct 412 TATCCAGAAAGAATCAACCCTTCACTTGGTCTTGAGACTTAGAGGAGG 365 >seq5918 Length=2920 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| |||| || | || || | || || || || ||||| || || || ||| || | Sbjct 2818 ATGTAGATATTCGTCAAGACTTTGACGGGCAAGACGATTACTCTAGACGTTGAACCCTCT 2759 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | || || ||||| ||||||||||||||||| || || |||||| Sbjct 2758 GACACCATAGAGAACGTGAAGGCCAAGATTCAAGACAAAGAAGGAATCCCCCCTGATCAA 2699 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || | |||| ||| |||| | |||| || || || Sbjct 2698 CAGAGACTGATCTTTGCAGGAAAGTAATTGGAAGATGGAAGAACCTTGTCTGACTACAAT 2639 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || ||||||||||| || || || ||||| ||| || | | || ||||| Sbjct 2638 ATCCAAAAGGAATCCACTCTCCATTTGGTCTTGAGACTCAGAGGTGGCGG 2589 >seq19711 Length=592 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||| | ||||| ||||||| || || || |||||||| || | || || ||| || | Sbjct 139 GATGTAAATCTTCGTTAAAACCCTTACTGGCAAAACTATCACCTTGGACGTTGAACCCTC 198 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||||||||||| ||||| || ||||||||||| Sbjct 199 AGACACCATTGAAAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATCCCTCCCGATCA 258 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCA--GATTAT 24880 ||| | | ||||| || || ||| | || || || || | | | ||| || || Sbjct 259 ACAGAGACTCATCTTCGCTGGAAAATAACTCGAAGA--CGGAAGAACTCTCAGCGACTAC 316 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| ||||| || || |||||||| | ||||| | ||||| Sbjct 317 AACATCCAAAAAGAATCAACTCTTCACTTGGTTCTTAGATTGAGAGGAGG 366 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | ||||| |||| || || || || || || || || ||||| || || | | Sbjct 368 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGATGTTGAGCCTTCA 427 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| | ||||| ||||| || || ||||||||| Sbjct 428 GATACCATTGAGAATGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 487 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||| ||||| || || |||| ||| |||| | || || || || Sbjct 488 CAAAGACTTATCTTCGCCGGAAAGCAATTGGAAGATGGAAGAACACTTTCTGACTACAAT 547 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||||| || || |||||||| ||| || Sbjct 548 ATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGA 583 >seq10356 Length=2916 Score = 98.7 bits (108), Expect = 9e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 139084 GAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACAC 139143 || || | ||| || || |||||||| || || | ||||| |||||||| | |||| Sbjct 1612 GAAGCCAAGTTACAAACAGCCACTTCATCAGGAGATGTATATTCAACAATTTCAGTACAC 1553 Query 139144 AAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCT 139203 ||||| || || || || || |||||||| | || |||| || || | ||| Sbjct 1552 AAATTTGAACTTTTTATTGTTCCCAAATTTTGCTAGTTAGACTTTCTATTGCACGTATCC 1493 Query 139204 TTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 |||||||||||||| ||||| ||||| || | ||||| ||||||||| Sbjct 1492 TTGTAAAGCATATAGGGTGTACCAGTCTCTAGTTGTGACTCTATAAT 1446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449754808125480