Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5988 111 1e-19 seq5752 91.5 1e-13 >seq5988 Length=2490 Score = 111 bits (122), Expect = 1e-19 Identities = 272/406 (67%), Gaps = 21/406 (5%) Strand=Plus/Minus Query 19313 ATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGG 19372 |||||||| | | | ||| ||| ||||| | ||| | | |||||||||||||| | Sbjct 1658 ATGTCATTGATAAGTATGGAATTAAGCATGTGAGAGGAATGCTACTTTATGGGCCACCTG 1599 Query 19373 GTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTT-ACA--AAACAACCTC 19429 || || |||||| | ||||| ||| | | ||| || || || |||| Sbjct 1598 GTACAGGTAAAACACTTATTGCTAGATAGATAGCCAAAGCTCTGGACTGTAATGAACCA- 1540 Query 19430 CCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATG 19489 || ||||| |||| ||||||||||| |||| ||||| ||| || || |||| Sbjct 1539 --AAGATTGTTCATGGACCTGAAATCTTTGATAAGTATGTGGGTGGTTCTGAGAAAAAGA 1482 Query 19490 TACGACGTTTGTTTGCTGACGCTGAAGAAGA-ACAAAAACGTTTAGGGCGCAAA--AGTT 19546 | || | |||||||| |||||| |||| | ||||| | |||| | || Sbjct 1481 TCAGAGACCTATTTGCTGATGCTGAAAAAGATATGAAAAC-TCTAGGAGATGAGTCAGGA 1423 Query 19547 CTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG 19606 || ||||| || || | |||||| | || || || || | |||||||||||||||| Sbjct 1422 CTA--CACATAATTATCTTTGATGAAATTGATGCTATTTGCAGACAAAGAGGTTCTGGTG 1365 Query 19607 TAAA---------TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACG 19657 || ||||| |||| ||||| ||||||||| | || ||||| | || | Sbjct 1364 GCAACTCAGGTACAGGAGTCAATGAAACTGTGGTCAATCAATTGCTTTCAAAGATGGATG 1305 Query 19658 GTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAG 19703 |||| || || || |||||| |||||||||| ||||| ||||| Sbjct 1304 GTGTCGACTCTCTCAACAATATTCTAGTTATTGGAATGACAAATAG 1259 >seq5752 Length=1520 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTC 44137 ||||| || ||||| | | |||||| | |||| | || | || ||| |||| || Sbjct 714 AAAGCTGAATGGGCAATGAGATGGATCAGTTCAGACAATAGCTATGCTGAAAGACTCGTT 655 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTT 44196 || || || | | | ||||| |||||||||||||| || || ||| | || || ||| | Sbjct 654 GCTTTCGCTGCTATTGAAGGAATTTTCTTTTCAGGGTCTTTCTGC-TCAATCTTCTGGCT 596 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||| || || ||| | ||||| || | || || ||||||||| | || ||||||||| Sbjct 595 AAAAAAGCGTGGTCTCATGCCAGGCCTCACTTTCTCAAATGAGCTTATCTCTCGTGATGA 536 Query 44257 AGGCTTACATTGCGATTTTGCTTG 44280 ||| | || ||||| ||||| Sbjct 535 GGGCATGCACACTGATTTCGCTTG 512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397333006122955