Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10356 170 2e-37 seq6480 141 1e-28 seq5752 89.7 6e-13 >seq10356 Length=2916 Score = 170 bits (188), Expect = 2e-37 Identities = 241/339 (71%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 ||| |||| |||| |||||| | ||||| ||||| |||| | ||||||| | | || Sbjct 1802 ATCAGCGAATCCTTAAACACCAAGTCCAATGGGTCTATGTCTCTTATTAGAATATTCAGC 1743 Query 111112 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 || || ||||| | || | ||||| || || |||||||| || | |||| Sbjct 1742 CTCCTTGACTGGATAGTAGTTCCCATCAATCACCTTATTCAGATTTTTAGTTATTCTCTT 1683 Query 111172 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 111231 ||| | | ||||||| ||||||||||| | ||||||| || |||||| |||| Sbjct 1682 TGTTACTGAATGAAGTAAATCATAATCAAACTCTCTTGTCTCTTTCTTTACATACCTTGG 1623 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 || || | ||| ||||| || ||||||||| ||||| | ||| || || | ||| Sbjct 1622 TAGTGCTACTGAAGCCAAGTTACAAACAGCCACTTCATCAGGAGATGTATATTCAACAAT 1563 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 ||| ||||| || || ||||| || || || |||||||| | | |||| ||| | || Sbjct 1562 TTCAGTACACAAATTTGAACTTTTTATTGTTCCCAAATTTTGCTAGTTAGACTTTCTATT 1503 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||||| ||||||||| ||||| ||||| || || ||||| Sbjct 1502 GCACGTATCCTTGTAAAGCATATAGGGTGTACCAGTCTC 1464 >seq6480 Length=2904 Score = 141 bits (156), Expect = 1e-28 Identities = 670/1050 (64%), Gaps = 37/1050 (4%) Strand=Plus/Minus Query 111051 CATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCG 111110 |||| || | ||||| || ||| | ||| ||||||||||||| ||| ||||| || || | Sbjct 1809 CATCAGCTAAACCTTAAATACCAATACCGATAGGTCTGTGTCTCATGTTAGAGTTGCGGG 1750 Query 111111 CAG--TCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 111168 | || ||| ||||| || || |||| |||| || |||| ||| |||| Sbjct 1749 CTTCATCGCAA--GGATAGAAGTTGTTGTCTATGATTCTATTTAAATTACGAGTAATTTG 1692 Query 111169 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT-GACAT--A 111225 | | | | || |||||| || ||||||||||| | || |||| || || | Sbjct 1691 CATGGCTACTTAATGAAGCTTATCATAATCAAAGG---------CTCCATTTGAAATGAA 1641 Query 111226 CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTC 111285 ||||| | ||||||||| |||||||| ||||| |||||| || || || Sbjct 1640 GCGAGGAAGTGAGATTGATGCTAAATTGCATACAGCTACCTCATCTGGGGAAGTATATTC 1581 Query 111286 TAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTT 111345 | || || ||| | ||| || ||||| || || || | |||||||| ||||| || Sbjct 1580 AATGATCTCACAACAAAGGTTAGAGCTCTTGATGGTTCCAAGATTCTTTTAATTACTTTT 1521 Query 111346 CTTGTTG-CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 ||||| || | ||| ||||| |||||||| || || || || || | | || | Sbjct 1520 ACTGTTGGCATG-ATCTTTGTAAAGCATGTATGGAGTTCCAGTTTCAATTTAGCTTTCAA 1462 Query 111405 GAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG--GCCCGT-CCCTCCGCCT 111461 |||||| | ||||| | ||| ||| | || ||| | ||||| | Sbjct 1461 TAATAGCTTCCCAAAGTTTTTGAGCTTT---AATAGTTTTTCTGCCGATACCCTCTTGTT 1405 Query 111462 CGTACTTTGTGTAGAGGGCTTCA--AACTCCTCACCCACCGCGTCGGAGAGACC--TGG- 111516 |||| | ||||| || ||| | ||||| || || | || | | ||| ||| Sbjct 1404 CGTATCTAGTGTATAG--CTTAACGAACTCTTCTCCGTGGACCTCAAATAAACCCTTGGC 1347 Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAG 111576 | | ||| || ||||| | | ||| | ||| || || | | ||| || || Sbjct 1346 TTCATTG---GGGCAGAATAAGGTCCAGTCTCCATTATCTCTTACTCTTTCCATAAAGAG 1290 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTT 111636 || |||| ||||| | | || |||||||| | || || | ||| || || Sbjct 1289 ATCAGGAACCCACAAAGCAAAGAAAAGATCTCTTGCTCTTTGTTCCTCTTTACCGTGATT 1230 Query 111637 GAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGAT 111696 || | || ||||| || | ||| || ||||||||||| || | ||||| |||| Sbjct 1229 TTTACGGAGCTATAGGAAATCAAAGATGTCAGCGTGCCATGGTTCTAAATAGATGGCGAA 1170 Query 111697 AGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCG 111753 |||||| |||| || ||| |||||| |||||| || || || | || || || | Sbjct 1169 AGATCCTTTTCTCTTACCACCACCTTGATCTACATAACGGGCAGTTTCATTGAAGACTCT 1110 Query 111754 AAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGC 111813 ||||| || | || |||| || ||||| ||||| ||| || ||| | | || Sbjct 1109 CAGCATGGGTACAAGGCCATTAGAATGACCGTTTGTTCCCTTGATGTAGGATCCAGTAGC 1050 Query 111814 TCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTC 111873 ||| | | ||| | | |||| || ||||| | ||| ||||| | || | Sbjct 1049 TCTAATGTTATGAACAGCAAGTCCAACTCCTCCAGCACTCTTAGAGATAAGAGCGATATT 990 Query 111874 CGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACT 111933 | | | ||| |||| ||||| | ||||| || ||||| | || | ||| || || Sbjct 989 CTTCAAAGTATCATATATACCCATAATTGAATCATCCTTCATCATGAGCAAGAAACAGCT 930 Query 111934 GGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACAT 111993 | ||| || ||| | || || || ||||| || || || || || |||||| ||||| Sbjct 929 GCTCATTTGAGGTTTAGGAGTTCCGGCATTAAATAGAGTAGGAGTAGCGTGAGTGAACCA 870 Query 111994 ACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 | | ||| || ||||| || | |||||||||| ||||| || || || Sbjct 869 TCTATCACTCATAAGGTTATATGTTTCAATTGCAGAATCAATATCTTCTTTATGAATACC 810 Query 112054 GATTGCGACCCGCATGAACATGTACTGTGG 112083 || || || |||| || ||| || || || Sbjct 809 GACTGAAACACGCAAGAGCATTTATTGAGG 780 >seq5752 Length=1520 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| || || ||||| ||||||||||| || |||||||||||||| ||||| Sbjct 533 CCCTCATCACGAGAGATAAGCTCATTTGAGAAAGTGAGGCCTGGCATGAGACCACGCTTT 592 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | |||||| ||||| || ||||| || || || | | || || Sbjct 593 TTTAGCCAGAAGATTGAGCAGAAAGACCCTGAAAAGAAAATTCCTTCAATAGCAGCGAAA 652 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| || | ||| || ||| | | || | | |||| |||||||||||| Sbjct 653 GCAACGAGTCTTTCAGC---ATAGCTATTGTCTGAACTGATCCATCTCATTGCCCATTCA 709 Query 122857 GCCTTCTT 122864 || ||||| Sbjct 710 GCTTTCTT 717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627832670493600