Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10356 161 1e-34 seq5752 87.8 2e-12 >seq10356 Length=2916 Score = 161 bits (178), Expect = 1e-34 Identities = 378/564 (67%), Gaps = 10/564 (2%) Strand=Plus/Minus Query 118526 ATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGC 118585 ||| |||| |||| ||||| || ||||| || | ||||||| ||||||| | ||| Sbjct 1802 ATCAGCGAATCCTTAAACACCAAGTCCAATGGGTCTATGTCTCTTATTAGAATATTCAGC 1743 Query 118586 GGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 118645 || || ||||| | |||| ||| || ||| |||| |||||||| || | ||| Sbjct 1742 CTCCTTGACTGGATAGTAGTTCCCATCAATCACCTTATTCAGATTTTTAGTTATTCTCTT 1683 Query 118646 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 118705 ||| | | |||||| || |||||||| | ||||||| || |||||| | || Sbjct 1682 TGTTACTGAATGAAGTAAATCATAATCAAACTCTCTTGTCTCTTTCTTTACATACCTTGG 1623 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 || || | ||| |||| ||||| |||| ||||| | || || || | ||| Sbjct 1622 TAGTGCTACTGAAGCCAAGTTACAAACAGCCACTTCATCAGGAGATGTATATTCAACAAT 1563 Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825 ||| || ||||| |||||||| || || || ||||| || | | || |||||| | || Sbjct 1562 TTCAGTACACAAATTTGAACTTTTTATTGTTCCCAAATTTTGCTAGTTAGACTTTCTATT 1503 Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 |||| ||||||||||||||| || || || || ||||| ||| |||| | ||| Sbjct 1502 GCACGTATCCTTGTAAAGCATATAGGGTGTACCAGTCTCTAGTTGTGACTCTATAAT--- 1446 Query 118886 CTTCCAGACATCGGCAGCTGGCACA-GTGGCGT---TGGCTCGCCCCTCTTCCTCGTA-C 118940 || | ||| | || || || | ||| | || ||| || | ||| || || | Sbjct 1445 CTATTA-CCATAGCCATCTTGCTTATATGGTCTTTCTGCCTCTACCTTGTTCTTCATAGC 1387 Query 118941 TTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 119000 |||| |||||| ||||| || || ||| || || | ||||| || || Sbjct 1386 TTTG-GTAGAGCTTGTCAAATTCCTCTCCCCAGGTATCACTCAATCCTGGGCACTCATTA 1328 Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 ||||| | |||| ||| || || || || || | ||||||| || ||||||||| Sbjct 1327 GGGCACATTAGAGTCCAGTGTTCATTCTTTTCTACTCTTCTCATGAAAAGATCTGGGATC 1268 Query 119061 CAGAGCGCCGAGAAGAGATCCCGA 119084 ||||| || |||| | ||| ||| Sbjct 1267 CAGAGGGCATAGAACAAATCACGA 1244 >seq5752 Length=1520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| ||||| ||||| || ||||| ||||| || |||||||||||||| ||||| Sbjct 533 CCCTCATCACGAGAGATAAGCTCATTTGAGAAAGTGAGGCCTGGCATGAGACCACGCTTT 592 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || || || || ||||| || || || | | ||||| Sbjct 593 TTTAGCCAGAAGATTGAGCAGAAAGACCCTGAAAAGAAAATTCCTTCAATAGCAGCGAAA 652 Query 130154 GCAAAGAGACGCTCAGCAAAG 130174 |||| ||| | |||||| || Sbjct 653 GCAACGAGTCTTTCAGCATAG 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618238916397960