Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5752 107 2e-18 seq6480 96.9 4e-15 >seq5752 Length=1520 Score = 107 bits (118), Expect = 2e-18 Identities = 138/185 (75%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGG-AGCATCATTTGCACAACGTCTCAT 59989 ||||| |||||||| ||| ||||| ||| | | | | | | ||| || | ||| | Sbjct 714 AAAGCTGAATGGGCAATGAGATGGATCAGTTCAGACAATAGC-TATGCTGAAAGACTCGT 656 Query 59990 AGCTTTTGCATGCG-TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGC 60048 ||||| || ||| | |||||||| ||||| || || || ||||| | || ||||||| Sbjct 655 TGCTTTCGC-TGCTATTGAAGGAATTTTCTTTTCAGGGTCTTTCTGCTCAATCTTCTGGC 597 Query 60049 TCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACG 60108 | ||||||||||| |||||||| ||||| | |||||| || ||||| || || || || | Sbjct 596 TAAAAAAGCGTGGTCTCATGCCAGGCCTCACTTTCTCAAATGAGCTTATCTCTCGTGATG 537 Query 60109 AGGGC 60113 ||||| Sbjct 536 AGGGC 532 >seq6480 Length=2904 Score = 96.9 bits (106), Expect = 4e-15 Identities = 236/355 (66%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 79455 ACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGA 79514 ||| |||| || || || | |||||| |||||||| || || | |||||||||||| || Sbjct 1226 ACGGAGCTATAGGAAATCAAAGATGTCAGCGTGCCATGGTTCTAAATAGATGGCGAAAGA 1167 Query 79515 ACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAG 79574 || || | ||| || || || || | || || ||||| || | ||||| |||| || Sbjct 1166 TCCTTTTCTCTTACCACCACCTTGATCTACATAACGGGCAGTTTCATTGAAGACTCTCAG 1107 Query 79575 CATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCG 79634 |||||| || | ||| | | ||||| || || ||||| | || | || | Sbjct 1106 CATGGGTACAAGGCCATTAGAATGACCGTTTGTTCCCTTGATGTAGGATCCAGTAGCTCT 1047 Query 79635 AATGTT-CGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCT 79693 |||||| || ||| | ||| | || || | | ||| ||||| | ||| | || Sbjct 1046 AATGTTATGAACAG-CAAGTCCAACTCCTCCAGCACTCTTAGAGATAAGAGCGATATTCT 988 Query 79694 TGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCG 79753 | | || || || || ||| || || || |||||||| || || ||| ||||| Sbjct 987 TCAAAGTATCATATATACCCATAATTGAATCATCCTTCATCATGAGCAAGAAACAGCTGC 928 Query 79754 ACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 ||| || || || || ||||| || || || || || || ||||| ||||| Sbjct 927 TCATTTGAGGTTTAGGAGTTCCGGCATTAAATAGAGTAGGAGTAGCGTGAGTGAA 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548350705085040