Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5918 170 4e-37 seq19711 158 3e-33 seq20137 145 2e-29 >seq5918 Length=2920 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| | ||| | || |||||||| || |||||||| || || || | | ||| ||| Sbjct 2601 AGTCTCAAGACCAAATGGAGAGTGGATTCCTTTTGGATATTGTAGTCAGACAAGGTTCTT 2660 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||||| | ||| ||||| ||||| || | ||||| ||||| || | |||||| Sbjct 2661 CCATCTTCCAATTACTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGGGGGATTCCTTCT 2720 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||| || ||||| |||||||| || |||||||||||| |||||| || ||||| Sbjct 2721 TTGTCTTGAATCTTGGCCTTCACGTTCTCTATGGTGTCAGAGGGTTCAACGTCTAGAGTA 2780 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 |||||||| ||||| | |||||| || || | || ||||||| Sbjct 2781 ATCGTCTTGCCCGTCAAAGTCTTGACGAATATCTACATTTTA 2822 >seq19711 Length=592 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||| | ||| |||||||| || ||||| || || || || | ||| || || Sbjct 586 AAGTCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGTTCT 527 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||||| ||||| || ||||||||||| | |||||| || || |||| ||||| Sbjct 526 TCCATCTTCCAATTGCTTTCCGGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTC 467 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 |||||||| |||||| || || || || ||||| || || ||||| ||||| || Sbjct 466 CTTGTCCTAGATCTTGGCCTTGACATTCTCAATGGTATCTGAAGGCTCAACATCGAGGGT 407 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| ||||| || ||||| ||||| || || Sbjct 406 GATGGTCTTGCCAGTGAGGGTCTTAACGAA 377 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||||||| || |||||||||||||| || || || || ||||| Sbjct 355 TCTAAGAACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCGCTGAGAGTTCTTCC 296 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| || | || || |||||||| || | ||||| || ||||| | |||||||| Sbjct 295 GTCTTCGAGTTATTTTCCAGCGAAGATGAGTCTCTGTTGATCGGGAGGGATACCTTCCTT 236 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| ||||||||||| |||||||| ||| |||||| || | ||||| Sbjct 235 GTCTTGGATCTTAGCCTTCACGTTTTCAATGGTGTCTGAGGGTTCAACGTCCAAGGTGAT 176 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || || || || || || || || Sbjct 175 AGTTTTGCCAGTAAGGGTTTTAACGAA 149 >seq20137 Length=989 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||| ||| | ||| || || ||||| ||||| ||||| || || | | ||| || Sbjct 175 AGTCTTAAGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGATAAGGTTCTA 234 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| ||||| || || ||||||||||| | | ||| || || |||| |||||| Sbjct 235 CCATCTTCTAGCTGTTTACCAGCGAAGATAAGTCTCTATTGATCGGGGGGAATTCCTTCT 294 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 ||||||| ||||| || || || ||||| ||||||||| ||||| || | ||| Sbjct 295 TTGTCCTAAATCTTGGCCTTAACATTCTCGATTGTGTCAGAGGGCTCAACATCTAAGGTG 354 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| ||||| | ||||| Sbjct 355 ATGGTTTTACCAGTGAGGGTCTTAACAAAGATTTGCAT 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158774902135715