Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5918 179 9e-40 seq19711 174 4e-38 seq20137 141 2e-28 seq20138 134 3e-26 seq4052 95.1 3e-14 seq23604 89.7 1e-12 seq23595 89.7 1e-12 >seq5918 Length=2920 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||||| ||| | |||||||||||||| ||||||| |||||| || | ||| ||||| Sbjct 2601 AGTCTCAAGACCAAATGGAGAGTGGATTCCTTTTGGATATTGTAGTCAGACAAGGTTCTT 2660 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| | | ||| || || ||||| |||| ||||| || || || || ||||| Sbjct 2661 CCATCTTCCAATTACTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGGGGGATTCCTTCT 2720 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| |||||| || |||||||| |||| ||| ||||||| || Sbjct 2721 TTGTCTTGAATCTTGGCCTTCACGTTCTCTATGGTGTCAGAGGGTTCAACGTCTAGAGTA 2780 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 |||||||||||||||||||| || | ||| | | ||||||| Sbjct 2781 ATCGTCTTGCCCGTCAAAGTCTTGACGAATATCTACATTTTA 2822 >seq19711 Length=592 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| ||||| ||||||||||||| ||||| ||| | |||||| || Sbjct 355 TCTAAGAACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCGCTGAGAGTTCTTCC 296 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| || | || ||||||||||| |||| ||||| ||||| || ||||||||||| Sbjct 295 GTCTTCGAGTTATTTTCCAGCGAAGATGAGTCTCTGTTGATCGGGAGGGATACCTTCCTT 236 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| |||||| ||| ||||||||||||| ||| ||||| || ||||| Sbjct 235 GTCTTGGATCTTAGCCTTCACGTTTTCAATGGTGTCTGAGGGTTCAACGTCCAAGGTGAT 176 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || | ||||| | ||| | || ||| || Sbjct 175 AGTTTTGCCAGTAAGGGTTTTAACGAAGATTTACATCTT 137 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| ||| | ||||||||||||||| ||||| | |||||| || | | ||||| Sbjct 586 AAGTCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGTTCT 527 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| | ||||| || ||||||||||||| |||||| ||||| ||||||||||| Sbjct 526 TCCATCTTCCAATTGCTTTCCGGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTC 467 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| | |||||| ||| ||| || ||||| ||||| | || || || | || Sbjct 466 CTTGTCCTAGATCTTGGCCTTGACATTCTCAATGGTATCTGAAGGCTCAACATCGAGGGT 407 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| |||||||| || | || || | ||| | || ||| Sbjct 406 GATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTACAT 368 >seq20137 Length=989 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| | ||| | |||||| || || || ||||| | ||||| || | || ||||| Sbjct 175 AGTCTTAAGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGATAAGGTTCTA 234 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||||||||| || |||||||||||||||| | ||| ||||| ||||| ||||| Sbjct 235 CCATCTTCTAGCTGTTTACCAGCGAAGATAAGTCTCTATTGATCGGGGGGAATTCCTTCT 294 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| | ||||| ||| ||| ||||| ||||| |||| || || ||||| ||| Sbjct 295 TTGTCCTAAATCTTGGCCTTAACATTCTCGATTGTGTCAGAGGGCTCAACATCTAAGGTG 354 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || | || || | || | |||||| Sbjct 355 ATGGTTTTACCAGTGAGGGTCTTAACAAAGATTTGCAT 392 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| ||| | ||| || || |||||||| |||| ||||||||| | | ||||| Sbjct 630 AAGTCTCAAGACCAAGTGAAGGGTTGATTCTTTCTGGATATTGTAATCAGATAGGGTTCT 689 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||||| | ||| ||||| ||||| |||| | ||| || || || ||||| || Sbjct 690 GCCGTCTTCTAATTACTTTCCAGCAAAGATGAGTCTCTATTGATCAGGTGGGATACCCTC 749 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||||||||||| ||| || || || ||||| || | || || || | || Sbjct 750 CTTGTCTTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGATGGCTCTACATCGAGAGT 809 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || || | ||||||| ||| | || |||||| Sbjct 810 AATAGTCTTTCCGGTAAGTGTTTTTACGAAGATTTACATTTT 851 >seq20138 Length=732 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 |||||||| ||| | ||| || || |||||||| |||| ||||||||| | | ||||| Sbjct 373 AAGTCTCAAGACCAAGTGAAGGGTTGATTCTTTCTGGATATTGTAATCAGATAGGGTTCT 432 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 || ||||||| | ||| ||||| ||||| |||| | ||| || || || ||||| || Sbjct 433 GCCGTCTTCTAATTACTTTCCAGCAAAGATGAGTCTCTATTGATCAGGTGGGATACCCTC 492 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 ||||||||||||||| ||| || || || ||||| || | || || || | || Sbjct 493 CTTGTCTTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGATGGCTCTACATCGAGAGT 552 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| || || | ||||||| ||| | || |||||| Sbjct 553 AATAGTCTTTCCGGTAAGTGTTTTTACGAAGATTTACATTTT 594 >seq4052 Length=2069 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 632 GAAAATTTGTCCATCAGTAATGGAGATGACATTAGTAGGAATATATGCGGACACATCACC 691 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| || || | || |||| ||| || || || |||||||| Sbjct 692 AGCTTGAGTCTCAATAATGGGTAGGGCAGTAAGAGAACCACCACC 736 >seq23604 Length=19201 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 372634 AATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGT 372693 || ||||||||||||||||||| |||||||||||||||| ||||| || | ||| |||| Sbjct 14434 AAGAGAGGGTAGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATTTAATAACCATGT 14375 Query 372694 ATAGGGTCTGAC 372705 |||| ||||||| Sbjct 14374 ATAGAGTCTGAC 14363 >seq23595 Length=4984 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 372634 AATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGT 372693 || ||||||||||||||||||| |||||||||||||||| ||||| || | ||| |||| Sbjct 1845 AAGAGAGGGTAGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATTTAATAACCATGT 1786 Query 372694 ATAGGGTCTGAC 372705 |||| ||||||| Sbjct 1785 ATAGAGTCTGAC 1774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192143243141354