Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq19711 168 2e-36 seq5918 150 4e-31 seq20137 147 5e-30 seq20138 123 6e-23 seq16451 84.2 5e-11 >seq19711 Length=592 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| ||||| || || || ||||| |||||| | || || ||| |||||||| Sbjct 144 AAATCTTCGTTAAAACCCTTACTGGCAAAACTATCACCTTGGACGTTGAACCCTCAGACA 203 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || ||||| || ||||| || ||||| ||||| |||||||| || || || Sbjct 204 CCATTGAAAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATCCCTCCCGATCAACAGA 263 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 |||| |||||||| |||||| | |||||||| ||||| ||||| ||| || ||| ||| Sbjct 264 GACTCATCTTCGCTGGAAAATAACTCGAAGACGGAAGAACTCTCAGCGACTACAACATCC 323 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||| || || | ||| | ||| | ||| Sbjct 324 AAAAAGAATCAACTCTTCACTTGGTTCTTAGATTGAGA 361 Score = 154 bits (170), Expect = 4e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| || || ||||| || || || ||||||||||| || || ||||| | Sbjct 372 AAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGATGTTGAGCCTTCAGATA 431 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| ||||| ||||| ||||| ||||||| ||||| || || || || || ||| Sbjct 432 CCATTGAGAATGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAACAAA 491 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 ||||||||||||||||||| || | ||||||||||| || ||| | || || || | | Sbjct 492 GACTTATCTTCGCCGGAAAGCAATTGGAAGATGGAAGAACACTTTCTGACTACAATATTC 551 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || || | || |||||||| ||| Sbjct 552 AAAAGGAATCCACTCTCCACTTGGTCTTGAGACTTAGA 589 >seq5918 Length=2920 Score = 150 bits (166), Expect = 4e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || ||| | || || || ||||| || || || || ||| ||| |||||| Sbjct 2812 ATATTCGTCAAGACTTTGACGGGCAAGACGATTACTCTAGACGTTGAACCCTCTGACACC 2753 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || |||||||| || |||||||| ||||||||||||||||| || || || || || Sbjct 2752 ATAGAGAACGTGAAGGCCAAGATTCAAGACAAAGAAGGAATCCCCCCTGATCAACAGAGA 2693 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCA 178105 || ||||| || ||||| | | ||||||||||| || |||| | || || || |||| Sbjct 2692 CTGATCTTTGCAGGAAAGTAATTGGAAGATGGAAGAAC-CTTGTCTGACTACAATATCCA 2634 Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| ||||| || || ||| | || |||||||||||| Sbjct 2633 AAAGGAATCCACTCTCCATTTGGTCTTGAGACTCAGA 2597 >seq20137 Length=989 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || ||||| |||||| | || || || ||| ||| Sbjct 389 CAAATCTTTGTTAAGACCCTCACTGGTAAAACCATCACCTTAGATGTTGAGCCCTCTGAC 330 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||| |||||||||||||||| || || || || | Sbjct 329 ACAATCGAGAATGTTAAGGCCAAGATTTAGGACAAAGAAGGAATTCCCCCCGATCAATAG 270 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| || |||||||| |||||||| || || | | || || ||| | Sbjct 269 AGACTTATCTTCGCTGGTAAACAGCTAGAAGATGGTAGAACCTTATCTGACTACAACATT 210 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || ||||| || || | || || ||||||||| Sbjct 209 CAAAAGGAGTCAACCCTCCACTTGGTCTTAAGACTCAGA 171 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| ||||| || || ||||| || || || ||||| || || || |||| Sbjct 844 AAATCTTCGTAAAAACACTTACCGGAAAGACTATTACTCTCGATGTAGAGCCATCTGACA 785 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || ||||||||||| ||||| || ||||| || || ||||| || || || | Sbjct 784 CTATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAATAGA 725 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 |||| ||||| || ||||| | | ||||| || || || || | ||||| || ||| Sbjct 724 GACTCATCTTTGCTGGAAAGTAATTAGAAGACGGCAGAACCCTATCTGATTACAATATCC 665 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||||||||| || || | || |||||||| ||| Sbjct 664 AGAAAGAATCAACCCTTCACTTGGTCTTGAGACTTAGA 627 Score = 113 bits (124), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACA 177984 || ||||| || ||| | || ||||| || ||||| || || || || || || ||| Sbjct 614 ATCTTCGTTAAGACTTTGACTGGAAAGACTATCACTCTTGACGTTGA--GCCTAGTGACA 557 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || || ||||| ||||| | || |||||||| ||||| || || || || Sbjct 556 CCATTGAAAATGTCAAGGCTAAGATCTAAGATAAAGAAGGTATCCCACCCGATCAACAGA 497 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || ||||||||||| || || || |||||||| || || | || |||||| || Sbjct 496 GATTGATTTTCGCCGGAAAGCAACTTGAGGATGGAAGAACCCTCTCTGACTATAACATCT 437 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||||||||| || || | || | ||||| ||| Sbjct 436 AGAAAGAATCAACTCTTCACTTGGTCCTCAGACTAAGA 399 >seq20138 Length=732 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA 177984 |||| ||||| ||||| || || ||||| || || || ||||| || || || |||| Sbjct 587 AAATCTTCGTAAAAACACTTACCGGAAAGACTATTACTCTCGATGTAGAGCCATCTGACA 528 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 | || ||||||||||| ||||| || ||||| || || ||||| || || || | Sbjct 527 CTATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCACCTGATCAATAGA 468 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 |||| ||||| || ||||| | | ||||| || || || || | ||||| || ||| Sbjct 467 GACTCATCTTTGCTGGAAAGTAATTAGAAGACGGCAGAACCCTATCTGATTACAATATCC 408 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||||||||| || || | || |||||||| ||| Sbjct 407 AGAAAGAATCAACCCTTCACTTGGTCTTGAGACTTAGA 370 Score = 118 bits (130), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACA 177984 || ||||| || ||| | || ||||| || ||||| || || || || || || ||| Sbjct 357 ATCTTCGTTAAGACTTTGACTGGAAAGACTATCACTCTTGACGTTGA--GCCTAGTGACA 300 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||| || || ||||| ||||| | || |||||||| ||||| || || || || Sbjct 299 CCATTGAAAATGTCAAGGCTAAGATCTAAGATAAAGAAGGTATCCCACCCGATCAACAGA 240 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || | || ||||||||||| || || || |||||||| || ||| | || || ||| | | Sbjct 239 GATTGATTTTCGCCGGAAAGCAACTTGAGGATGGAAGAACCCTTTCTGACTACAACATTC 180 Query 178105 AAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || || | ||| | ||||||||| Sbjct 179 AAAAGGAGTCAACCCTCCACTTGGTTCTCAGACTCAGA 142 >seq16451 Length=2876 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 214239 CTTTTTGGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTA 214298 |||| || |||||||||| | ||| || ||||||||||| ||| ||||| || | Sbjct 1474 CTTTCTGCCTCTTCCCTCTTCTTCATATTTTTCATAAAGTTTCTCGAATTCTTCTCCCCA 1533 Query 214299 G-ACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCC 214357 | | | |||| ||| || ||| || || || | ||| |||||| | |||| | Sbjct 1534 GCATGTAGTCAA-ACCTGGGCACTCATTAGGACACATTAGAGTCCATTCTTCATTCTTTT 1592 Query 214358 TGACTCTTTTCATGAAAAGGTCGGAAGTCCAGATTGCATAAAAAATCTCTCTGGCTCT 214415 |||||||||||| ||||| || | |||||| |||||| || | ||||||||||| Sbjct 1593 CGACTCTTTTCATAAAAAGATCTGGGATCCAGAGTGCATAGAATAGATCTCTGGCTCT 1650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203339599532854