Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3673 203 2e-47 >seq3673 Length=8284 Score = 203 bits (224), Expect = 2e-47 Identities = 436/646 (67%), Gaps = 12/646 (2%) Strand=Plus/Minus Query 101633 AATCTAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCAT-CAAT 101691 ||| |||| || ||||| || |||||||| | ||||| || || | ||| | |||| Sbjct 6681 AATTTAAGAGTAGGAAAAGGGTAAGGAGTTCTATTTAACTGAATCTTTA-AGCTTTCAAT 6623 Query 101692 GTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATT 101751 |||| ||| | ||||||| || | ||| ||||| || | | | || || Sbjct 6622 ATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGCCTGTAAGTT 6563 Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 | || || || ||||| | || || | ||||||| |||||| || ||||| || || Sbjct 6562 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACCCC 6503 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 | ||| | |||| ||||||||||||| ||| || | ||||| ||| | ||||| Sbjct 6502 AAGCCCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCGTCAAAAACATA 6443 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931 |||||||| ||| | ||||||||| || || |||||| | | ||| |||||||| Sbjct 6442 AAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCA 6383 Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTT 101991 ||||||| | || | |||| ||||| | |||| || || || | | ||| Sbjct 6382 TGCACACAAAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATAATATTTTT 6323 Query 101992 TAATTGGTCAACTCCTTCTCCTTTATA---ATCGCGCCCAACACCTTTATATTCTGCTCC 102048 |||||| |||||||||| ||||||| ||| || | | || ||||||| || || Sbjct 6322 TAATTGATCAACTCCTTTGTCTTTATAATTATCATGC---ATATCTGTATATTCAGCACC 6266 Query 102049 GAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAA 102108 ||||||||||| ||||||||||| | || || ||||| | ||||| | | || | Sbjct 6265 AAAATGCCTCCATTGAAATCCATAAATTGGACCGAGATCATTAACTTCTCTATGA-AATA 6207 Query 102109 ACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGC 102168 | ||||||||||||| || | |||||| || ||||| || ||| | | Sbjct 6206 ATTTTCTTTATCTAAAAATTCCCTTGTTCCATTAGCTTCCCATATTCTTACGTTTTTTTC 6147 Query 102169 TGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACC 102228 | | | || | | || ||||| ||||||||||| | |||||| | || ||| Sbjct 6146 TAACAAAGTATTTCCATTTGTTTCCCCTCTTATAAACCACAATAATTCTTCGATAATACC 6087 Query 102229 TCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAA---ATTCATTT 102271 ||| ||||| | | || || ||||| | ||||| |||||||| Sbjct 6086 TCTTATAAATAATTTTTTTGTTGTTAATAATGGAAAATATTCATTT 6041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361218271840229