Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2267 376 3e-99 >seq2267 Length=4651 Score = 376 bits (416), Expect = 3e-99 Identities = 995/1505 (66%), Gaps = 31/1505 (2%) Strand=Plus/Plus Query 53137 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 53196 ||| ||||| || || ||||| ||| ||||| | | | |||||| ||||| || Sbjct 2198 ATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGTAAATGTTACTTGT 2257 Query 53197 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256 ||| ||||| | ||| |||||||||||||||||||| | |||||| || || |||||||| Sbjct 2258 ATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 2317 Query 53257 TGCCACCAATAAACT--ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 53314 ||| | || || | |||||| | || | | | || ||||| | ||||| ||| Sbjct 2318 TGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTTTTAATAAATCC 2375 Query 53315 CAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 53371 |||| |||| | ||| | ||||| || || | Sbjct 2376 CAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGG 2435 Query 53372 CTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTC--CTTCTCAGCTAGTTCACAA 53428 || || | || | ||| ||||| || ||||| || | ||| | |||| |||| | Sbjct 2436 CTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGT--GCTAATTCAACA 2492 Query 53429 CTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCT 53488 | ||||| || | ||||| || || || || || | ||||||| |||| ||| Sbjct 2493 GACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTAATTCTTTAGCT 2552 Query 53489 TC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 53546 || ||| | || ||||||| |||| || ||||| | |||||||||||||| || | Sbjct 2553 TCGTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTC 2610 Query 53547 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 53606 | || || ||||||| ||| || ||||| || ||||||||||| ||| || ||||||| Sbjct 2611 CTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAAT 2670 Query 53607 TAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 | | || |||||||||| | ||||| ||| | ||| | ||| | | ||| Sbjct 2671 TTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTT 2730 Query 53667 GAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCAATAGATGCCAGAT 53720 ||||| ||| || | ||||| ||||| | |||||||| || |||| || Sbjct 2731 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCCAAAT 2790 Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780 ||||||| ||||| |||| || | |||| ||||| ||| || | ||||||| Sbjct 2791 TACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACATAAGTTACTAC 2850 Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 | || || ||||||||||||| ||||||| || || || ||||| ||||| | | Sbjct 2851 ATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTTTATATAACA 2910 Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900 | |||| |||||||||||| || || || || || ||| | | | || Sbjct 2911 TATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTGTGCAA 2970 Query 53901 TTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGT 53960 | | | ||| | |||||| ||| ||| |||||| || |||||| |||| Sbjct 2971 GGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAACTTTTCAAATTCGT 3030 Query 53961 CTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 54019 |||||| || ||| | || || |||||||||| |||||||| || | ||| | | Sbjct 3031 CTCCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTTTTTA 3089 Query 54020 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 54079 | || || |||| ||||||||| | |||||| | ||||| ||| ||||| ||||| Sbjct 3090 TTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCTCGA 3149 Query 54080 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 54139 | ||| ||| || || || ||| ||| | | ||| | || | | |||||| ||| Sbjct 3150 GCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAA 3209 Query 54140 TGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 54199 ||||| || || | |||| | | | ||| | ||| ||| || ||||||| Sbjct 3210 TGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCTTGATCTACA 3269 Query 54200 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 54259 || || || || | |||| |||| || |||||||||| | |||||| ||| |||||| Sbjct 3270 TACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTTGATATACCATTA 3329 Query 54260 GTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGATAGACCTATCCCCC 54317 || || |||| || | ||| | | |||| | | | ||||| || | Sbjct 3330 GTTCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCAACTCCTATGCCGC 3387 Query 54318 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 54377 |||| ||||| || || || ||| ||||||| || ||| | || || || ||| || Sbjct 3388 CTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATACCTTCAATAGAAT 3447 Query 54378 CATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 54436 | |||| | ||| ||||||||| |||||||| | || ||||| | |||| Sbjct 3448 CTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGGGGTTCCTGAATTA 3506 Query 54437 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATA 54496 ||||| || || | ||| || || || |||||| ||| | || || || || || | | Sbjct 3507 AATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGATATGTTTCTAAA 3566 Query 54497 GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 54556 ||| || | ||| | ||||||||| | || || | |||||| | || ||||| Sbjct 3567 GCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAATAAATGTTGAGGA 3626 Query 54557 CTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCA 54616 | ||||| || || || || ||| | || || ||| ||| ||||||||||| ||| Sbjct 3627 CGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAAGTTTTAAATCCA 3686 Query 54617 AAATA 54621 ||||| Sbjct 3687 AAATA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593666094451920