Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3673 185 6e-42 >seq3673 Length=8284 Score = 185 bits (204), Expect = 6e-42 Identities = 392/581 (67%), Gaps = 3/581 (1%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 ||||| ||||| ||||| ||||||| || || || |||||||| | | | Sbjct 6627 TCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGCCTGT 6568 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 || | | || || || |||||| | || |||| ||||||| |||||| || || || Sbjct 6567 AAGTTACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGA 6508 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 ||||| || || | |||| ||||||||||| | ||| || | ||||| ||| | Sbjct 6507 ACCCCAAGCCCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCGTCAAAA 6448 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| |||| || | |||||| || || || ||||||| | |||| ||| Sbjct 6447 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACA 6388 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 ||||| ||||||| | |||| |||| || || | | | || ||| || || Sbjct 6387 TTCCATGCACACAAAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATAATA 6328 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCT 97410 | |||||||||||||| |||| | |||||| | | | | || |||||| || Sbjct 6327 TTTTTTAATTGATCAACTCCTTTGTCTTTATAATTATCATGCATATCTGTATATTCAGCA 6268 Query 97411 CCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG 97470 ||||||||||||||||| |||||||||| || || || || ||||||||| | | Sbjct 6267 CCAAAATGCCTCCATTGAAATCCATAAATTGGACCGAGATCATTAACTTCTCTATGA-AA 6209 Query 97471 AAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGAT 97530 || ||||||||| | ||| | |||||| || ||||| || || | Sbjct 6208 TAATTTTCTTTATCTAAAAATTCCCTTGTTCCATTAGCTTCCCATATTCTTACGTTTTTT 6149 Query 97531 GCT-GCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAAC 97589 || ||| | ||| | | || ||||| ||||||||||| |||||||| | || Sbjct 6148 TCTAACAAAGTATTT-CCATTTGTTTCCCCTCTTATAAACCACAATAATTCTTCGATAAT 6090 Query 97590 ACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAAT 97630 |||||| ||||| | | || |||||||| | ||||||| Sbjct 6089 ACCTCTTATAAATAATTTTTTTGTTGTTAATAATGGAAAAT 6049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346752390530030