Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3673 300 2e-76 seq4931 116 6e-21 >seq3673 Length=8284 Score = 300 bits (332), Expect = 2e-76 Identities = 532/762 (70%), Gaps = 19/762 (2%) Strand=Plus/Minus Query 205336 GGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAACATAT 205395 ||||| |||| || || | | ||| || | ||||| | | |||||||||| ||| Sbjct 6669 GGAAAAGGGTAAGGAGTTCTATTTAACTGAATCTTTAAGCTTTCAATATGATTATTATAA 6610 Query 205396 ATATGTGCATTACC-AATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGC 205454 | ||| |||||||| |||| ||| ||||||||| || | ||| ||| || ||||| Sbjct 6609 ACATGAGCATTACCCAATAC-ATGTATAAATTCAGCTGCCTGTAAGTTACATACTTGTGC 6551 Query 205455 AATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATC 205514 |||||||| || |||| | ||| ||||| ||| ||||| || || | || | ||| Sbjct 6550 TATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACCCCAAGCCCTAAATC 6491 Query 205515 AGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTAC 205574 | |||||||||||||| ||||| | |||| | || |||| |||||| || Sbjct 6490 ACAAGATCTTTGATACATAATACATGATA---ATTTTCCGTCAAAAACATAAAATTG-AC 6435 Query 205575 AAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTA 205633 | || | ||||||||| |||| |||| | || | |||| | |||||| || | Sbjct 6434 ATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCACACA 6375 Query 205634 ATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGAT 205693 | || || |||| | ||| | |||||| ||| ||||||||||| | ||||||||| Sbjct 6374 AAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATAATATTTTTTAATTGAT 6315 Query 205694 CAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCC 205753 ||| ||||| | | ||||||| || |||||| |||||| |||||||||||| | || Sbjct 6314 CAACTCCTTTGTCTTTATAATTATCATGCATATCTGTATATTCAGCACCAAAATGCCTCC 6255 Query 205754 ATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGttttt 205813 ||||||| ||||||| |||||| | |||| ||| ||||| | | || ||| | Sbjct 6254 ATTGAAATCCATAAATTGGACCGAGATCATTAACTTCTCTATGA-AATAATTTTCTTTAT 6196 Query 205814 ttatatattttaatgatccattttcatcccaaatatggattcctttattttttaGAA--T 205871 || | ||| || |||||| | |||| |||| | | ||| ||| | | || | Sbjct 6195 CTAAAAATTCCCTTGTTCCATTAGCTTCCC--ATATTCTTACGTTTTTTTCTAACAAAGT 6138 Query 205872 ATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAA 205931 |||| ||| ||| || ||||||||| ||||||||||| | ||| ||||| ||| Sbjct 6137 ATTTCCATTTGTTTCCCCTCTTATAAACCACAATAATTCTTCGATAATACCTCTTATAAA 6078 Query 205932 CATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATATTTCATAGTTAAACC 205991 | | ||||||||| ||||||||||| | |||| ||| ||| ||||||| | | || Sbjct 6077 TAATTTTTTTGTTGTTAATAATGGAAAATATTCATTTAAATTAAATTTCATCATATATCC 6018 Query 205992 ATATACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTATTCTTCCATTAGATAAT 206049 | || | || | | | ||||||||||| | |||||||| |||||| || Sbjct 6017 AAATTTACTTAACACA-CCAAACCTGTTCTATCATCTTGGTTAT--TTCCATGCATTATC 5961 Query 206050 ATTTCTGATATACCTTTTAAATATTGATATTCATCTGATGAT 206091 || || ||||| |||||||||||||||||| ||||||| Sbjct 5960 ATATCATATATAATATTTAAATATTGATATTCA--TGATGAT 5921 >seq4931 Length=1290 Score = 116 bits (128), Expect = 6e-21 Identities = 125/160 (78%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 1132 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1191 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| ||| ||||| || ||||||||||||||| |||| || || ||||| | Sbjct 1192 CGATACTATTGAAAATGTTAAAGCA-AAAATTCAAGATAAAAAAGGAATTCCCCCTGACC 1250 Query 124657 -AACAAAGGCTTA-TTTTTGCAGGAAAACAATTAGAGGAT 124694 |||||| || | ||||||| |||||||||||||| ||| Sbjct 1251 AAACAAAAACTAATTTTTTGCTGGAAAACAATTAGAAGAT 1290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755385374307200