Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2873 120 3e-22 >seq2873 Length=4471 Score = 120 bits (132), Expect = 3e-22 Identities = 326/488 (67%), Gaps = 22/488 (5%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAAC---TGACAT 15942 |||||||||| ||| | |||||| || | |||||| | | | |||||| |||| Sbjct 3994 TTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGAC-- 4051 Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||||| || |||||| ||||||||||||||||||||||||| ||| || || Sbjct 4052 -TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 4110 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCA---ATTCCAA 16059 ||||| ||| ||| |||||||| ||| | | |||| || || | |||| Sbjct 4111 ATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTC--- 4167 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC-ACAGTTCATTCCTA 16118 | ||||||||| || |||||||| ||||| || || ||| || | |||||||| | Sbjct 4168 TAGTAATCTATCAGCAACAAATTCAATATATTGAGACA-TAAGTCTTGAATTCATTCCAA 4226 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 |||| | | || | | ||| | ||| | | |||| | ||| ||||| | | Sbjct 4227 TTAAATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAA 4286 Query 16179 TTATATCTCTTACTAC-ACTATT--TAACGGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 ||||| | || || || | ||| | | |||||| || | |||| | Sbjct 4287 CTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAA---ACTATAAATTAAGC 4343 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 || ||||||| ||| | ||||| || || || ||||| || || |||||| | || Sbjct 4344 AATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAAC 4403 Query 16296 C-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 | || ||| | | ||||||||| |||||| || || ||| ||| ||| ||| Sbjct 4404 CATGTAATTTAT-TTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAAT 4462 Query 16355 ATACCTTC 16362 |||||||| Sbjct 4463 ATACCTTC 4470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462468760909400