Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq3673 203 3e-47 >seq3673 Length=8284 Score = 203 bits (224), Expect = 3e-47 Identities = 361/522 (69%), Gaps = 10/522 (2%) Strand=Plus/Plus Query 20037 AAATGAAT---TTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGA 20093 |||||||| |||| |||||||| || ||| ||||| | ||| || | ||||| Sbjct 6041 AAATGAATATTTTCCATTATTAACAACAAAAAAATTATTTATAAGAGGTATTATCGAAGA 6100 Query 20094 GTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGT-AGAAAAAGGAGTTA 20152 ||||| |||||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 6101 ATTATTGTGGTTTATAAGAGGGGAAACAAATGGAAAT-ACTTTGTTAGAAAAAAACGTAA 6159 Query 20153 AGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACA--GCAATGGATTTGACAACCG 20210 || ||| || ||||| | | | |||||||| | | | || |||| | | | Sbjct 6160 GAATATGGGAAGCTAATGGAACAAGGGAATTTTTAGATAAAGAAAATTATTTCATA---G 6216 Query 20211 TCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATA 20270 ||| ||| | ||||| | ||||||||||||||||| |||||||| |||||||| Sbjct 6217 AGAAGTTAATGATCTCGGTCCAATTTATGGATTTCAATGGAGGCATTTTGGTGCTGAATA 6276 Query 20271 TGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAA 20330 | || ||| | |||||| | ||||||| ||||||||| ||||| |||| || Sbjct 6277 TACAGATATGCATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATATTATAAA 6336 Query 20331 TTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGA 20390 ||||||||||| | || | ||| |||||||||| || || ||||| | ||||| Sbjct 6337 TTTAATTAAAAATGATCCTACTTGTAGACGAATTATTTTGTGTGCATGGAATGTAAAAGA 6396 Query 20391 TGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAA 20450 | | | |||||| || ||||| |||||||| |||| |||||||| ||| | | Sbjct 6397 TTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGACGG 6456 Query 20451 TGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAA 20510 |||| || ||| ||||||||| |||| |||| | || || || ||||| ||||| Sbjct 6457 AAAATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGGGCTTGGGGTTCCATTCAA 6516 Query 20511 TATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGT 20552 |||||| ||| | | |||| |||||||| ||||| || Sbjct 6517 TATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGT 6558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399147614253655