Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2873 131 2e-25 >seq2873 Length=4471 Score = 131 bits (144), Expect = 2e-25 Identities = 306/452 (68%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| || || ||||| || | || | | | | || ||||| || ||| Sbjct 3995 TAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTT 4054 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||||||||||||||| || ||||| |||| | ||||| ||| Sbjct 4055 TGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCC 4114 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 || ||| |||||||||| | || ||| |||||| ||| |||| | ||||||| Sbjct 4115 ATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGTAAT 4174 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTAGTTT 14094 ||||| |||| || |||||||||||||||| ||| || ||||||| || |||| | Sbjct 4175 CTATCAGCAACAAATTCAATATATTGAGACA-TAAGTCTTGAATTCATTCCAATTA-AAT 4232 Query 14095 TACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 ||| | | ||| || |||| | | |||| || || || || | ||| Sbjct 4233 CACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTATAT 4292 Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAA 14211 | || || ||| | | | | ||||| || || ||||||| || ||| Sbjct 4293 TTTGAACAACTTCTTCTG--GTAATTTATTTTCTAATAAACTATAAATTAAGCAATTAAA 4350 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCA 14270 |||| ||| || || |||||||| ||||| | ||| || ||||||||| || || | Sbjct 4351 ATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCATGTAA 4410 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCA 14302 | || | ||||||| |||||||| |||||| Sbjct 4411 TTTAT-TTTGTTTTTTAAACCAAAAAATTGCA 4441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482300506715720