Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2267 387 2e-102 >seq2267 Length=4651 Score = 387 bits (428), Expect = 2e-102 Identities = 996/1503 (66%), Gaps = 27/1503 (2%) Strand=Plus/Plus Query 62375 ATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62434 ||| || || || || |||||| ||| ||||| | | | |||||| ||||| || Sbjct 2198 ATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGTAAATGTTACTTGT 2257 Query 62435 ATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62494 ||| ||||| | || |||||||||||||||||||| | |||||| || || |||||||| Sbjct 2258 ATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 2317 Query 62495 TGCCACCAATAAACT--ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCC 62552 ||| | || || | |||||| | || | | | || ||||| | ||||| ||| Sbjct 2318 TGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTTTTAATAAATCC 2375 Query 62553 CAATTCCAAAGATCCGACGGTACAA---CANNNNNNNNNNNATATTGTAGAATACCGTTA 62609 |||| |||| | ||| || | |||||| || || | Sbjct 2376 CAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGG 2435 Query 62610 CTGGC-GTACGATCCTACATATGTATCATATGGTCCTTC--CTTCTCAGCTAGTTTACAA 62666 || || | || | ||| ||||| |||||||| || | ||| | |||| || | | Sbjct 2436 CTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGT--GCTAATTCAACA 2492 Query 62667 CTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCT 62726 | ||||| || | ||||| || || ||||| || | ||||||| |||| ||| Sbjct 2493 GACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTAATTCTTTAGCT 2552 Query 62727 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCA 62786 || ||| ||||||| |||| || ||||| | || ||||||||||| || || Sbjct 2553 TCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCT 2612 Query 62787 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62846 || || ||||||| ||| || ||||| || ||||||||||| ||| || |||||||| Sbjct 2613 ATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAATTT 2672 Query 62847 ATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA 62906 | || |||||||||| | |||||| ||| | ||| | ||| | | ||| | Sbjct 2673 CTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTTTA 2732 Query 62907 AAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTA 62960 |||| |||| | |||| | |||| | ||||||| || |||| |||| Sbjct 2733 AAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCCAAATTA 2792 Query 62961 CACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 63020 || || ||||| |||| || | |||| ||||| ||| || | |||||||| Sbjct 2793 CAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACATAAGTTACTACAT 2852 Query 63021 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63080 || || ||||||||||||| ||||||| || || || ||||| ||||| | || Sbjct 2853 TTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTTTATATAACATA 2912 Query 63081 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 63140 |||| |||||||||||| ||| || || || || ||| | || | || Sbjct 2913 TATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTGTGCAAGG 2972 Query 63141 ATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCT 63200 | | | ||| | ||||| ||| ||| ||||| || ||| || |||||| Sbjct 2973 ACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAACTTTTCAAATTCGTCT 3032 Query 63201 CCCCAAACATTGTCC-AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63259 |||||| ||| | || | |||||||||| |||||||| || | ||| | | | Sbjct 3033 CCCCAAG-ATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTTTTTATT 3091 Query 63260 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGT 63319 || || |||| ||||||||| | |||||| | ||||| ||| ||||| ||||| | Sbjct 3092 TTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCTCGAGC 3151 Query 63320 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63379 ||| ||| || || || ||| ||| | | ||| | || | | |||||| ||||| Sbjct 3152 TCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATG 3211 Query 63380 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63439 ||| || || | |||| || | | ||| | ||| ||| || ||||||| || Sbjct 3212 CCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCTTGATCTACATA 3271 Query 63440 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 || || || | |||| |||| || |||||||||| | ||| |||||||||||||| || Sbjct 3272 CCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTTGATATACCATTAGT 3331 Query 63500 ACCGGAGATAT-AGCCTCCACTG-GCACGAATATTACTAATTGATAGACCTATTCCCCCT 63557 || |||| || | ||| | | |||| | | | ||||| || ||| Sbjct 3332 TCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCAACTCCTATGCCGCCT 3389 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || ||||| || || || ||| ||||||| || ||| | || ||||| || ||| Sbjct 3390 GCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATACCTTCAATAGAATCT 3449 Query 63618 TCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 |||| | ||| ||||||||| |||||||| | || | ||||| | |||||| Sbjct 3450 GATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGGGGTTCCTGAATTAAA 3508 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 ||| || || | ||| || || || |||||| ||| | || || || || || | ||| Sbjct 3509 TAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGATATGTTTCTAAAGC 3568 Query 63737 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 | || | ||| | ||||||||| | || || | |||||| | || ||||| | Sbjct 3569 TTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAATAAATGTTGAGGACG 3628 Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 ||||| |||||| || || ||| || || || ||| ||| ||||||||||| ||||| Sbjct 3629 TTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAAGTTTTAAATCCAAA 3688 Query 63857 ATA 63859 ||| Sbjct 3689 ATA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629758719927120