Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2267 580 1e-160 >seq2267 Length=4651 Score = 580 bits (642), Expect = 1e-160 Identities = 1165/1702 (68%), Gaps = 44/1702 (3%) Strand=Plus/Plus Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCC 36996 ||||| || || |||| | ||| || ||||| || | |||| ||||| || ||| Sbjct 2007 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 2066 Query 36997 CAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAA 37053 ||||| |||||||| | || ||| | | | |||| || ||| || ||| | | Sbjct 2067 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATATATTGGACACTT 2126 Query 37054 CCATTATGTAACAC--AATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTA 37111 ||||| || | || |||||| | || || || | || ||||| | |||| | | Sbjct 2127 CCATTGTG-AGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAA 2184 Query 37112 GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTAT 37171 | ||| | || | || ||||||||||| || || ||| |||||| | ||| | Sbjct 2185 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 2244 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | || || || ||||||||||||| || |||||||| | || ||||| || || || | Sbjct 2245 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 2304 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || ||||| ||||||| ||||| |||||| ||||||||| | | ||| | |||| Sbjct 2305 CTGTTGGCATAGGTGCTAAAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTT 2364 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAAC----CACATATCATATTGT 37347 ||| | || ||||||||| | || | || | |||| | ||||||||| ||||| Sbjct 2365 TTAATAAATCCCAATCCCA-ATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 2423 Query 37348 AGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT 37407 | || |||| || |||||| | | ||||||| ||||| || || | | || ||| Sbjct 2424 AATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGTGCT 2483 Query 37408 AGTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 | ||| ||| ||| ||||| || |||||||| ||||| || || ||| | ||||| Sbjct 2484 AATTC--AAC-AGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTT 2540 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 ||| ||| ||||| || || ||| ||| | || | ||||| ||| || || Sbjct 2541 AATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 2600 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || || || || || || || |||| ||| | ||||| ||| | | |||| | | | Sbjct 2601 CCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATT 2660 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATT 37644 || |||||||| | || || ||||||| || |||| || | ||||| ||||| || Sbjct 2661 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATC 2719 Query 37645 CTCAACTTGTCGAACAT-AAATACGTTATT------ATTAACAAATTTACTCAACGAAAT 37697 | | || | || || |||| | || || || ||||||||||| || | ||| Sbjct 2720 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 2779 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTAC 37756 || | | |||||| ||||| |||||||| || | | ||| || || || || Sbjct 2780 TGAAGCCAAATTACAAACAGCTACTTCATCAG-GTGAGGTGTATTCAATTATTTCACAAC 2838 Query 37757 AGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAAT 37816 | | ||||| || |||||||||| ||||| ||||||| ||||| ||| || | || Sbjct 2839 ATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCAT 2898 Query 37817 CTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATA 37876 ||||||||| ||||| || || ||| |||||| | | |||| ||||| Sbjct 2899 CTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA 2958 Query 37877 AACTTCTTGCTTTAACGATCGCTTTAAttt-----ttttCTTTGTTTCGTATTCTATATA 37931 || ||||| | || || | ||| || ||||||| ||| |||| | |||| Sbjct 2959 AA--TCTTG-TGCAAGGACTGTTTTTTTTCCTAAATTTTCTTC--TTCATATTTTGTATA 3013 Query 37932 TAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACAT 37991 ||| || | ||| || | ||||| || | ||| ||||||||||| |||||||| Sbjct 3014 TAACTTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACAT 3073 Query 37992 TAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGC 38051 || || ||| | || || || || ||| | || ||||||||||||||||||||| | || Sbjct 3074 TAAAGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGC 3133 Query 38052 AGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAA 38111 | |||||||||| | ||| ||||||| || || ||| |||||||| || ||| Sbjct 3134 ATAAAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAA 3193 Query 38112 ATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATC 38171 || || ||||| | |||||||| |||||||| | | | | |||| |||||| | Sbjct 3194 TTCAAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCC 3253 Query 38172 ACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACC 38231 || || |||| | ||| || | || | |||| | | |||||||| || |||| ||| Sbjct 3254 TCCACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACC 3313 Query 38232 ATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTAT-CG 38290 ||| ||| | || || | || ||||||| | || | ||| ||||| ||| | | Sbjct 3314 ATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGACCTCTTATAT--CTTGTACA 3371 Query 38291 ACAA-TCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAA 38348 ||| |||||| || ||||| |||||| | || ||||| ||||||||||| || ||||| Sbjct 3372 GCAACTCCTATGCCGCCTGC-TGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAA 3430 Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAA 38408 ||||||||| ||| || || || | || || ||||||| |||||||| || Sbjct 3431 TATACCTTCAATAGAATCTGATTTCATAGATAATAGAAAACAAGATGACATTTGCGGTCG 3490 Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 ||| ||||| | ||||||||||| || | |||||| |||| |||||| |||| | Sbjct 3491 TGGGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAA 3550 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 || ||||||||||| | | || | |||| | ||||| || | || || ||||| Sbjct 3551 ATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCAT 3610 Query 38529 TAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTC 38588 || | |||||| || | ||| || ||||||||||| | | || ||| ||| ||| Sbjct 3611 TAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTC 3670 Query 38589 TAATGTTTTTATTCCAAAATAA 38610 ||| ||||| | |||||||||| Sbjct 3671 TAAAGTTTTAAATCCAAAATAA 3692 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| ||||| |||| | || ||| | || ||||| | || || ||| ||| Sbjct 1648 TCAACTGTAAATTTAATAGCGTCTGTTGCTGCTTGAGTTCTTAAGTAGTATGCTCCGGTT 1707 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| ||| | ||| || |||||||||||||||| | ||||||| ||||||| || Sbjct 1708 TTTAGACCCTTTTCCCAACCATAAAAATGCATACTGGATAATTTTGCGAATGTAGGCTTT 1767 Query 36910 TCTATATATATTGTCATTGATTGA 36933 | |||||| || | | ||| ||| Sbjct 1768 TGTATATAGATGTTTAGTGACTGA 1791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468480998787760