Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2267 390 1e-103 >seq2267 Length=4651 Score = 390 bits (432), Expect = 1e-103 Identities = 1117/1699 (66%), Gaps = 40/1699 (2%) Strand=Plus/Plus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| |||||| | |||| ||| || ||||| | || || ||||||| |||||| Sbjct 2007 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 2066 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGA---- 65095 |||| ||||||||| | | || | || | || | | || | | | |||| Sbjct 2067 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 2125 Query 65096 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 65154 |||| | || || ||| | | || || || |||| ||| || ||| || | Sbjct 2126 TCCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAA 2184 Query 65155 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 | || | | | ||| ||||| || || ||||| ||| ||||| | | | || Sbjct 2185 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 2244 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 |||| ||||| ||||| ||||| | ||| |||||||||||||||||||| | |||||| | Sbjct 2245 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 2304 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACT--ATTTCTAAGACCGTATGTTCTGATTTTATC 65332 | || ||||||||||| | || || | |||||| | || | | | || ||||| | Sbjct 2305 CTGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTT 2362 Query 65333 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTG 65389 ||||| ||||||| |||| | ||| | ||| Sbjct 2363 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 2422 Query 65390 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTC--CTTCTC 65446 || || || | || || | || | ||| ||||| || ||||| || | ||| | Sbjct 2423 TAATATTCCTTGGCTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGT- 2480 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 |||| |||| | | ||||| || | ||||| || || || || || | ||||| Sbjct 2481 -GCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATT 2539 Query 65507 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 2540 TAATTCTTTAGCTTCGTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 2597 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 |||||||| || || || || ||||||| ||| || ||||| || ||||||||||| | Sbjct 2598 AATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTA 2657 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 || || |||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 2658 ATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 2717 Query 65685 TCCTTCAGTTTGAGAAAATCAAATCGCTCAT-----CTATTA-CAAACATGTTCAATGCA 65738 || | | ||| ||||| |||| | | |||| | |||| | |||||| Sbjct 2718 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 2777 Query 65739 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 65798 | || |||| ||||||||| ||||| |||| || | |||| ||||| ||| Sbjct 2778 ATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAA 2837 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 65858 || | |||||||| || || ||||||||||||| ||||||| || || || ||| Sbjct 2838 CATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 2897 Query 65859 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 65918 || ||||| | || |||| |||||||||||| ||| || || || || ||| Sbjct 2898 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 2957 Query 65919 ACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 65978 | || | || | | | ||| | |||||| ||| ||| |||||| || Sbjct 2958 AAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 3017 Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAA 66037 ||| || |||||||||| || ||| | || || |||||||||| |||||||| || Sbjct 3018 TTTTCAAATTCGTCTCCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAA 3076 Query 66038 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 | ||| | | | || || |||| ||||||||| | |||||| | ||||| ||| Sbjct 3077 AGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 3136 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 ||||||||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 3137 AAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 3196 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | |||||| ||||||| || || | |||| || | | ||| | ||| ||| Sbjct 3197 AAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCC 3256 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 || ||||||| || || || || | |||| |||| || |||||||||| | |||||| Sbjct 3257 ACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATT 3316 Query 66278 GGATGTACCATTGGTCCCGGAGATATA--GCTTC-CACTTGCACGAATATTACTAATTGA 66334 ||| ||||||| || || ||||| ||| || | | |||| | | Sbjct 3317 TGATATACCATTAGTTCCTCTAATATAAGAATTCTGAC---CTCTTATATCTTGTACAGC 3373 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||||| || ||||| ||||| || || || ||| ||||||| || ||| | || Sbjct 3374 AACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATAT 3433 Query 66395 GCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 || || ||| ||| |||| | ||| ||||||||| |||||||| | || Sbjct 3434 ACCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTG 3492 Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 ||||| | ||||||||| || || | ||| || || || |||||| ||| | || || Sbjct 3493 GGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAAT 3552 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 || || || | |||| || | ||| | ||||||||| | || || | ||||| Sbjct 3553 GATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTA 3612 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 | | || ||||| | ||||| || || || || ||| || || || ||| ||| | Sbjct 3613 ATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTA 3672 Query 66634 AAGTTTTAAAACCAAAATA 66652 |||||||||| |||||||| Sbjct 3673 AAGTTTTAAATCCAAAATA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658111269070360