Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2267 479 4e-130 >seq2267 Length=4651 Score = 479 bits (530), Expect = 4e-130 Identities = 1139/1697 (67%), Gaps = 36/1697 (2%) Strand=Plus/Plus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| |||||| | |||| ||| || ||||| | || || ||||||| |||||| Sbjct 2007 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 2066 Query 78919 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGA---- 78974 |||| ||||||||| | | || | || | || | | || | | | |||| Sbjct 2067 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 2125 Query 78975 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 79033 |||| | || || ||| | | || || ||||||| ||| || ||| || | Sbjct 2126 TCCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAA 2184 Query 79034 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 79093 | || | | | ||| ||||| || || ||||| ||| ||||| | | | || Sbjct 2185 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 2244 Query 79094 AAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATG 79153 |||| ||||| ||||||||||| | ||||||||||||||||||||||| | |||||| | Sbjct 2245 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 2304 Query 79154 CCGTTGGCATAGGTGCCACCAATAAACT--ATTTCTAAGACC--GTATGATCTGATTTTA 79209 | |||||||||||||| | || || | |||||| | || ||||| || ||||| Sbjct 2305 CTGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATG--CTTATTTTT 2360 Query 79210 TCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAA---CATTCCAAAGATCATAT 79266 | ||||| | |||||||||||| | | || ||||||| | |||| || Sbjct 2361 TTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAAT 2420 Query 79267 TGTAGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTC 79325 |||| || || | || || | | | ||| | |||| |||||| || || | || Sbjct 2421 TGTAATATTCCTTGGCTTGCTGGACTACCCT-TATATGATTCATATGGACCATGTACTTG 2479 Query 79326 GGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATT 79385 ||||||||| | | ||||| || | ||||| || || || || || | ||||| Sbjct 2480 TGCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATT 2539 Query 79386 GAGATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 | |||| ||||| | | | ||| ||||||| |||| || ||||| | ||||||| Sbjct 2540 TAATTCTTTAGCTTCGTCAGAT-TCATATGGATATCTTAAAAGCATAAATGTATCTGCTA 2598 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 ||||||| || || || || ||||||| ||| || ||||| || ||||||||||| || Sbjct 2599 ATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAA 2658 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCAC-A 79563 | || |||||||| | || |||||||||| | ||| || | || || ||| | | | Sbjct 2659 TTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATA 2717 Query 79564 TCCTTTAGTTTGAGAAAATCAAATCGTCCAT-----CTATTA-CAAACATGTTCAACGCG 79617 || | || ||| ||||| |||| | | |||| | |||| | || || Sbjct 2718 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 2777 Query 79618 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTG 79677 | || |||| ||||||||| ||||| |||| || | |||| ||||||||| Sbjct 2778 ATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAA 2837 Query 79678 CAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 || | ||||||||| ||||| ||||||||||||| ||||||| || || || ||| Sbjct 2838 CATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 2897 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797 || ||||| | || | || |||||||||||| ||| || || || || ||| Sbjct 2898 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 2957 Query 79798 ACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAAT 79857 | || | || | | | || | |||||| ||| |||| ||||||||| Sbjct 2958 AAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 3017 Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917 ||| || |||||||||||| || ||| || |||||||| | ||||||||| || Sbjct 3018 TTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAA 3077 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 | ||| | | || || ||||||| ||||||||| | |||||| | ||||| ||| | Sbjct 3078 GTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 3137 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 |||| ||||| | ||| || || || || ||| ||| | | ||| | || | Sbjct 3138 AATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 3197 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | |||||| |||||||| || || | |||| || | | ||| || ||| ||| Sbjct 3198 AAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCA 3257 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 || ||||||| || || || || | |||| |||| || |||||||||| | |||||| Sbjct 3258 CCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTT 3317 Query 80158 GATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGATA 80215 ||| ||||||| || || |||| || | ||| | | |||| | | | Sbjct 3318 GATATACCATTAGTTCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCAA 3375 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 ||||| || ||||| ||||| || || || ||| ||||||| || ||| | || | Sbjct 3376 CTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATAC 3435 Query 80276 CCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 | || || ||| |||| | ||| ||||||||| |||||||| | || Sbjct 3436 CTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGGG 3494 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | ||||||||| || || | ||| || || || |||||| ||||| || || Sbjct 3495 GTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGA 3554 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || || | |||| ||| | ||| | ||||||||| | | || | |||||| Sbjct 3555 TATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAAT 3614 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 | || ||||| | ||||| || || ||||| ||| || || || ||| ||| ||| Sbjct 3615 AAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAA 3674 Query 80515 GTTTTAAAACCAAAATA 80531 |||||||| |||||||| Sbjct 3675 GTTTTAAATCCAAAATA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718201650845560