Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2873 147 2e-30 >seq2873 Length=4471 Score = 147 bits (162), Expect = 2e-30 Identities = 348/509 (68%), Gaps = 19/509 (4%) Strand=Plus/Plus Query 13476 AACaaaaaaaGTTGTTATTTATT--CAACTTTATA-ATATTCAATAAAAACT-AAAAATC 13531 ||||||||| || | |||| || ||||||| | ||||| ||| || ||||||| Sbjct 3947 AACAAAAAA--TTATAATTTTTTATCAACTTTTTTTATATT--ATATTTTCTTAAAAATC 4002 Query 13532 AACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTC 13591 | || || ||||| || | || | | | | || ||||| || |||||||| || Sbjct 4003 AGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTTTGATAATC 4062 Query 13592 ACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATC 13651 |||||||||||||||||| || ||||| |||| | ||||| ||||| ||| Sbjct 4063 TGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCCATCCAATT 4122 Query 13652 AAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGC 13711 |||||||||| | || ||| |||||| ||| |||| | ||||||||||||||| Sbjct 4123 AAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGTAATCTATCAGC 4182 Query 13712 AATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTAGTTTTACAGGAA 13770 || ||| |||||||||||||||| ||| || ||||||| || |||| | ||| | Sbjct 4183 AACAAATTCAATATATTGAGACA-TAAGTCTTGAATTCATTCCAATTA-AATCACATGGT 4240 Query 13771 TTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATA 13829 | ||| || |||| | | |||| || || ||||| | ||| || || | Sbjct 4241 AAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTATATTTTGAACA 4300 Query 13830 ATCTCATTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATCACAAT 13887 | || | | | | ||||| || || ||||||| || ||||||| || Sbjct 4301 ACTTCTTCTG--GTAATTTATTTTCTAATAAACTATAAATTAAGCAATTAAAATCAGTAT 4358 Query 13888 GAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCT 13946 | || || |||||||| ||||| | ||| || ||||||||| || || || || | Sbjct 4359 GTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCATGTAATTTAT-TT 4417 Query 13947 CGtttttttAACCAAAATATTGCAGCAAA 13975 ||||||| |||||||| |||||| |||| Sbjct 4418 TGTTTTTTAAACCAAAAAATTGCA-CAAA 4445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479683151428600