Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2873 125 7e-24 >seq2873 Length=4471 Score = 125 bits (138), Expect = 7e-24 Identities = 305/452 (67%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| || || ||||| || | || | | | | || ||||| || ||| Sbjct 3995 TAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTT 4054 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || ||||||||||||||| || || ||||| |||| | ||||| ||| Sbjct 4055 TGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCC 4114 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || ||| ||||||||| | || ||| |||||| ||| |||| | || |||| Sbjct 4115 ATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGTAAT 4174 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAATTCATACCTATTAGTTT 13550 |||||||||| ||| |||||||||||||||| ||| || ||||||| || |||| | Sbjct 4175 CTATCAGCAACAAATTCAATATATTGAGACA-TAAGTCTTGAATTCATTCCAATTA-AAT 4232 Query 13551 TACAGGAATTATATT-AGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||| | | ||| | | |||| | | |||| || || || || | ||| Sbjct 4233 CACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTATAT 4292 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAA 13667 | | || || || | | | | ||||| || || ||||||| || ||| Sbjct 4293 TTTGAACAACTTCTTCTG--GTAATTTATTTTCTAATAAACTATAAATTAAGCAATTAAA 4350 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCA 13726 |||| ||| || || |||||||| ||||| | ||| || ||||||||| || || | Sbjct 4351 ATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCATGTAA 4410 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCA 13758 | || | ||||||| |||||||| |||||| Sbjct 4411 TTTAT-TTTGTTTTTTAAACCAAAAAATTGCA 4441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478544057929560