Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2267 434 1e-116 >seq2267 Length=4651 Score = 434 bits (480), Expect = 1e-116 Identities = 1123/1694 (66%), Gaps = 30/1694 (2%) Strand=Plus/Plus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| |||||| | |||| ||| || ||||| | || || ||||||| |||||| Sbjct 2007 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 2066 Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGA---- 71057 |||| ||||||||| | | || | || | || | | || | | | |||| Sbjct 2067 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 2125 Query 71058 TCCACCATCTGCAAT-AATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 71116 |||| | ||||| ||| | | ||| || ||||||| ||| || ||| || | Sbjct 2126 TCCATTGTGAGCAATTAATTGT-TGTTTCATATCTTCATCCCACAAACCTCTATCAAAAA 2184 Query 71117 AAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGT 71176 | || | | | ||||||||| || || ||||| ||| ||||| | | | || Sbjct 2185 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 2244 Query 71177 AAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 71236 |||| ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 2245 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 2304 Query 71237 CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTT 71296 | || ||||||||||| | | || |||||| | |||||| | ||||| | || Sbjct 2305 CTGTTGGCATAGGTGCTAAAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTT 2364 Query 71297 TTAGAGATTCCCAATTCCAA-AGATCCGATGGTACAA---CNNNNNNNNNNNNNNNNNNN 71352 ||| | ||||||| |||| | | || ||| | Sbjct 2365 TTAATAAATCCCAATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGT 2423 Query 71353 NNNATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGC 71411 || || | || || | | | ||| ||||| || ||||| || | | || || Sbjct 2424 AATATTCCTTGGCTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGTGC 2482 Query 71412 TAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAG 71471 || |||| | | ||||| || ||||||| || || || || || | ||||| | Sbjct 2483 TAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTAA 2542 Query 71472 ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 71531 |||| ||||| ||| ||||||| |||| || ||||| | ||||||||||| Sbjct 2543 TTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCC 2602 Query 71532 TTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGG 71591 ||| || || || || ||||||| || || ||||| || ||||||||||| ||| || Sbjct 2603 TTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATTGG 2662 Query 71592 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATCCT 71650 |||||||| | || |||||||||| | |||||| | || || ||| | | ||| | Sbjct 2663 GTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCAT 2721 Query 71651 TTAGTTTGAGAAAATCAAA-TCTCCCATCTAT-TACAAACACGTT----CAAGGCAACAG 71704 || ||| ||||| ||| ||| | | | || |||| || || |||| | Sbjct 2722 ATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTG 2781 Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764 | |||| ||||||||| ||||| |||| || || |||| || |||||| || | Sbjct 2782 AAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACATA 2841 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 |||||||| || || ||||||||||||| ||||||| || || || ||||| | Sbjct 2842 AGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTT 2901 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 71884 |||| | ||| | || |||||||||||| ||| || || || || ||| | Sbjct 2902 TATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAAT 2961 Query 71885 CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 || | || | | | || || | |||||| ||| |||| ||||||||| || Sbjct 2962 CTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAACTTTT 3021 Query 71945 CGAACTCGTCTCCCCAAGCATTGTC-TAATCCAGGACATTCATTCGGACACATCAATGAC 72003 | || ||||||||||||| ||| | ||| || ||||||||||| |||||||| || | | Sbjct 3022 CAAATTCGTCTCCCCAAG-ATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTC 3080 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || | | || || ||||||| ||||||||| | |||||| | ||||| ||| |||| Sbjct 3081 CAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAAT 3140 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 | ||||| | ||| || || || || ||| ||| | | ||| | || | | | Sbjct 3141 AAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAA 3200 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 ||||| |||||||| || || | |||| || | | ||| | ||| ||| || Sbjct 3201 ATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCT 3260 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||||| || || || || | |||| |||| || |||||||||| | |||||| ||| Sbjct 3261 TGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTTGAT 3320 Query 72244 GCACCATTGGTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTGCTAATTGATAGAC 72301 |||||| || || |||| || | ||| | | |||| | | | | Sbjct 3321 ATACCATTAGTTCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCAACTC 3378 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 |||| || ||||| ||||| || || || ||| ||||||| || ||| | || || | Sbjct 3379 CTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATACCTT 3438 Query 72362 CTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 | ||| ||| |||| | ||| ||||||||| |||||||| | || ||| Sbjct 3439 CAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGGGGTT 3497 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || | ||||||||| || || | ||| || || || |||||| ||||| || || || Sbjct 3498 CCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGATAT 3557 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 || || | |||| ||| | ||| | ||| ||||| | | || | |||||| | | Sbjct 3558 GTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAATAAA 3617 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 || ||||| | ||||| || || ||||| ||| || || || ||| ||| |||||| Sbjct 3618 TGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAAGTT 3677 Query 72601 TTAAAACCAAAATA 72614 ||||| |||||||| Sbjct 3678 TTAAATCCAAAATA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671076456874040