Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2267 82.4 8e-11 >seq2267 Length=4651 Score = 82.4 bits (90), Expect = 8e-11 Identities = 461/728 (63%), Gaps = 25/728 (3%) Strand=Plus/Plus Query 156871 AAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAttt 156930 ||||| ||| || || ||||| | || || || || || ||||| | |||| ||||| Sbjct 2585 AAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTT 2644 Query 156931 ttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTAC 156990 || || || ||| ||||| |||| | ||||||||||||| ||| | || | || Sbjct 2645 TTCAGCTTCTTTAATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATT-TCTAGTAA 2703 Query 156991 ATGTTTGACCACAGTG-TGCAATAGTTGAAAATCAAAAG------TATCATTATTGATAT 157043 ||| | | | | ||| || ||||| ||| | || ||| | | Sbjct 2704 TAATTTTAGTAATATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAA 2763 Query 157044 ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATT 157103 ||||| | ||||| || || | |||||| || || ||| || || | | |||| Sbjct 2764 ATTTACATAATGCAATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATT 2823 Query 157104 GTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTT 157163 | |||||| ||| || || || ||||| || ||| |||| ||||||| || Sbjct 2824 CAATTATTTCACAACATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATT 2883 Query 157164 TGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTA 157223 | ||||| || || || |||||||| || ||| || ||||| |||| ||| || Sbjct 2884 TAGAATTGCATGCATCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTA 2943 Query 157224 TGATGTTGCG---CATTAATGTAAC-CGCGGGCA--TTTGCTCGCGAAACTGGCCTTTAT 157277 || | || ||| ||| | | || | ||| | | ||| | || | Sbjct 2944 --ATATAGCAAACCATAAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATT----TTCTT 2997 Query 157278 CCTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCG-TTGAGCTTAGGA 157336 | || || | | | || | | |||||| || || || | | || || | | | ||| Sbjct 2998 CTTCATATTTTGTATATAACTTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCT-GGA 3056 Query 157337 CACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATA 157396 || || |||||||||||||| | ||| | ||||||| || | ||||||||||| | Sbjct 3057 CATTCATTAGGACACATTAAAGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAA 3116 Query 157397 TCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTT 157456 || || ||||| | ||| | | ||||| || ||| | ||||| | ||| ||| Sbjct 3117 TCAGGTACCCAAATAGCATAAAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTT 3176 Query 157457 CGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGG 157516 | | | ||||| || | ||| || ||||||| || || | || ||||| Sbjct 3177 TTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAA 3236 Query 157517 GCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGC 157573 | |||||||| || ||||||||||| || | | || ||| ||||||||| | Sbjct 3237 GATCCTTTTCTTTTCCCTCCACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTT 3296 Query 157574 AGCATTGG 157581 | |||||| Sbjct 3297 AACATTGG 3304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506967000491280