Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2873 125 6e-24 >seq2873 Length=4471 Score = 125 bits (138), Expect = 6e-24 Identities = 218/307 (71%), Gaps = 20/307 (7%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACA---GAC 12856 |||||||||| ||| | ||||||||| | || | || ||||| ||||||| ||| Sbjct 3994 TTAAAAATCAGTATTCAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAC 4051 Query 12857 ATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATA 12916 |||||||| || ||||||||||||||| || ||||||||||||| ||| || || Sbjct 4052 ---TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATT 4108 Query 12917 TTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTA---ATTCT 12973 ||||| ||| || |||||||| ||| | | ||| |||||||| ||||| Sbjct 4109 AAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCT 4168 Query 12974 AGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC-ACAGTTCATTCC 13032 ||| ||||| ||||||||||| || || || || || ||| || | |||||||| Sbjct 4169 AGT---AATCTATCAGCAACAAATTCAATATATTGAGACA-TAAGTCTTGAATTCATTCC 4224 Query 13033 TATTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGA 13091 ||||| | ||| || | || ||| | ||| | | |||| ||||||||||| Sbjct 4225 AATTAA-ATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTT 4283 Query 13092 TAACTAT 13098 ||||||| Sbjct 4284 TAACTAT 4290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430943115819558