Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4931 138 3e-27 >seq4931 Length=1290 Score = 138 bits (152), Expect = 3e-27 Identities = 128/160 (80%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAA-TTAGCCTCTGTT-GATCAGGAGGTATTCCTTCTT 104462 ||||||| ||||||||||||||||| |||| | |||| | ||||| || ||||||| || Sbjct 1289 TCTTCTAATTGTTTTCCAGCAAAAAATTAGTTTTTGTTTGGTCAGGGGGAATTCCTTTTT 1230 Query 104463 TATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAA 104522 |||| ||||| |||||||| |||||||| | |||||| ||||| || || || || | Sbjct 1229 TATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGA 1170 Query 104523 TAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 | || || || || | |||||||||||| || |||||||| Sbjct 1169 TTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151288067608132