Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2693 215 6e-51 seq3673 161 1e-34 >seq2693 Length=4885 Score = 215 bits (238), Expect = 6e-51 Identities = 477/711 (67%), Gaps = 21/711 (3%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| || ||||||||| | || |||| | |||||| ||||||| || || Sbjct 3212 AATTTTAACTTTGAAGAATTAGGTATAGGGGCGCTAGATGAAGAATTTAAAACAATATTT 3153 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || ||||||| ||| | ||| | | ||||| ||| ||||||| ||| Sbjct 3152 AGAAGAACATTTGCAAGTAGGATATATCCAAATTATATAATCAAACAATTAGGAATAAAA 3093 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| |||| || || ||||| |||| ||||| || ||||||||| |||| ||| || Sbjct 3092 CATGTAAAGGGTATGATATTATATGGCCCTCCCGGGACAGGTAAAACACTAATAGCTAGA 3033 Query 164572 TGCATTGCTCAAGCTTTTAAATCGCG--ACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | || | | || || | | || ||||||| ||||||| |||||| ||| Sbjct 3032 CAAATAGGTAAAACACTAAATGCGAGGGATCC--TAAAATTATTAATGGACCTGAAATAT 2975 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || |||||||||||| | || |||| ||| || | || || ||| | || || ||| Sbjct 2974 TAAATAAATATGTAGGTCAATCCGAAGAAAATATTCGTAATTTATTTAAAGATGCAGAAT 2915 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAG 164749 |||| | || || | || | | ||||||| ||||| | || ||||| |||| Sbjct 2914 TAGAATATAAACAATCTGGAGAAAATTCATTATTACATATTATTATATTAGATGAAATAG 2855 Query 164750 ATGCTCTTTGCAAAAAACGTGGTGATA----ATATTAT---TCA--------TGAT-GCA 164793 |||| |||| | || | ||| | || | | ||| |||| ||| Sbjct 2854 ATGCAATTTGTCGACAAAGAGGTAGTGGCGCATCTAGTGGGTCAGGGGTAAATGATAGCA 2795 Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 | || ||||| || | || ||||||||||| ||| | ||||||||||| ||| | Sbjct 2794 -TAGTCAATCAATTATTATCAAAAATAGATGGAGTAAACAGTTTAAATAATATATTATTA 2736 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | || ||||| || || |||||||| ||||| || || ||| |||| |||||||| Sbjct 2735 ATCGGGATGACAAATAGAATAGATTTAATAGATGAAGCATTGTTAAGACCAGGTCGATTT 2676 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 ||||| | || |||||| |||||| | |||||||| | ||||||| ||||| || Sbjct 2675 GAATTACATATTGAAATATCATTACCAAATAAAGAAGGTAGAATTCAAATATTAAATATT 2616 Query 164974 CATGTGGCTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATA 165033 ||| || |||| | | ||| |||| | ||||| || || | || || Sbjct 2615 CATACAAAAAATATGAGACAAAATAATAAATTAAATAAGGATGTTAATATAGAAGAATTA 2556 Query 165034 GCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGA 165084 |||| ||||| ||||| | |||||| ||| | || |||||||||||| Sbjct 2555 GCTGAAAAAACTCCAAATTTTTCTGGTGCAGAAATTGAAGGATTAGTAAGA 2505 >seq3673 Length=8284 Score = 161 bits (178), Expect = 1e-34 Identities = 289/414 (70%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 6817 TTTATAGCTTTTA-TATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 |||| |||||| | |||||| ||||| |||||||| || | ||| |||||||| Sbjct 6636 TTTA-AGCTTTCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTC 6578 Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 | ||| | | | | |||| || || | |||||| |||| | ||| ||||| | Sbjct 6577 AGCTGCCTGTAAGTTACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAAT 6518 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTG-ACAAGATAAAA 6994 ||| || || || || | || | ||| ||||||||||| ||| ||| ||||| Sbjct 6517 ATTGAATGGAACCCCAAGCCCTAAATCACAAGATCTTTGATA-CATAATACATGATAATT 6459 Query 6995 TATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTA 7054 | ||| | | ||||||||||||| || | |||||| |||||||| | ||||||| Sbjct 6458 TTCCGTCAAAAACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTA 6399 Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 ||| | |||||| ||| || | ||| |||||| | | |||| ||||||||| Sbjct 6398 AATCTTTTACATTCCATGCACACAAAATAATTCGTCTACAAGTAGGATCA-TTTTTAATT 6340 Query 7115 TTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 || ||||| ||| ||||||||| | || | ||| ||||||| ||| || | Sbjct 6339 AAATTTATAATATTTTTTAATTGATCAACTCCTTTGTCTTTATAATTATCATGCATATCT 6280 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCA 7227 |||| | ||| |||||||| ||||||||||| |||||||| ||||| | |||| Sbjct 6279 GTATATTCAGCACCAAAATGCCTCCATTGAAATCCATAAATTGGACCGAGATCA 6226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595816293416400