Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2873 161 1e-34 >seq2873 Length=4471 Score = 161 bits (178), Expect = 1e-34 Identities = 321/463 (69%), Gaps = 18/463 (4%) Strand=Plus/Plus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| || || |||||| | | | ||||||| ||||| |||| Sbjct 3986 ATATTTTCTTAAAAATCAGTATTCAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 4042 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || ||||||||||| |||||||||||| || |||||||| ||||||| || Sbjct 4043 ACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 4102 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| ||| ||||||||||| ||| | ||| | |||| ||| || | Sbjct 4103 GATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAA 4162 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | || ||||||||| || |||||||| ||||||||| |||| | | ||||||| Sbjct 4163 CATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCATT 4222 Query 21356 CCGATCAATTTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTC 21414 || || || | ||| || | || || | ||| ||| | |||| || ||||| Sbjct 4223 CCAATTAA-ATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTC 4281 Query 21415 AACAATTATATTTATTATCCTAGATGTACTAGGGGGATACA----ATAATTGTTTAAACA 21470 || |||||| || | | | | || || || | |||| || | | Sbjct 4282 TTTAACTATATT--TTGAACAACTTCTTCT--GGTAATTTATTTTCTAATAAACTATAAA 4337 Query 21471 TCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 | || || ||||||| ||| | ||||||||| || || |||||||||||| ||||| Sbjct 4338 TTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATG 4397 Query 21531 TTAAACC-GGGCATTAATCCTCTCTTTTTTAACCAAAATATTG 21572 ||||||| | ||| || | | ||||| |||||||| |||| Sbjct 4398 TTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATTG 4439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531851073923960