Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2267 374 1e-98 >seq2267 Length=4651 Score = 374 bits (414), Expect = 1e-98 Identities = 1113/1698 (66%), Gaps = 38/1698 (2%) Strand=Plus/Plus Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| |||||| | |||| ||| || ||||| | || || ||||||| |||||| Sbjct 2007 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 2066 Query 62196 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGA---- 62251 |||| ||||||||| | | || | || | || | | || | | | |||| Sbjct 2067 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 2125 Query 62252 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 62310 |||| | || || ||| | | || || || |||| ||| || ||| || | Sbjct 2126 TCCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAA 2184 Query 62311 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370 | || | | | ||| ||||| || || ||||| ||| ||||| | | | || Sbjct 2185 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 2244 Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430 |||| ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 2245 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 2304 Query 62431 CAGTCGGCATAGGTGCCACCAATAAACT--ATTTCTAAGACCGTATGTTCTGATTTTATC 62488 | || ||||||||||| | || || | |||||| | || | | | || ||||| | Sbjct 2305 CTGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTT 2362 Query 62489 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTG 62545 ||||| ||||||| |||| | ||| | ||| Sbjct 2363 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 2422 Query 62546 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTC--CTTCTC 62602 || || || | || || | || | ||| ||||| || ||||| || | ||| | Sbjct 2423 TAATATTCCTTGGCTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGT- 2480 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 |||| |||| | | ||||| || | ||||| || || || || || | ||||| Sbjct 2481 -GCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATT 2539 Query 62663 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || |||| ||||| ||| | || ||||||| |||| || ||||| | || ||| Sbjct 2540 TAATTCTTTAGCTTCGTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 2597 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 |||||||| || || || || ||||||| ||| || ||||| || ||||||||||| | Sbjct 2598 AATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTA 2657 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 || || |||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 2658 ATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 2717 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAAGGCA 62894 || | | ||| ||||| |||| | |||| | |||| | || ||| Sbjct 2718 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 2777 Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 | || |||| ||||||||| ||||| |||| || | |||| ||||| ||| Sbjct 2778 ATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAA 2837 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || | |||||||| || || ||||||||||||| ||||||| || || || ||| Sbjct 2838 CATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 2897 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 || ||||| | || |||| |||||||||||| ||| || || || || ||| Sbjct 2898 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 2957 Query 63075 ACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAAT 63134 | || | || | | | ||| | ||||| ||| ||| |||||| || Sbjct 2958 AAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 3017 Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAA 63193 ||| || |||||||||| || ||| | || || |||||||||| |||||||| || Sbjct 3018 TTTTCAAATTCGTCTCCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAA 3076 Query 63194 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 | ||| | | | || || |||| ||||||||| | |||||| | ||||| ||| Sbjct 3077 AGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 3136 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 ||||| ||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 3137 AAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 3196 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | |||||| |||||||| || || | |||| || | | ||| | ||| ||| Sbjct 3197 AAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCC 3256 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 || ||||||| || || || || | |||| |||| || |||||||||| | ||| || Sbjct 3257 ACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATT 3316 Query 63434 TGATATACCATTGGTACCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGAT 63491 |||||||||||| || || |||| || | ||| | | |||| | | Sbjct 3317 TGATATACCATTAGTTCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCA 3374 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | ||||| || ||||| ||||| || || || ||| ||||||| || ||| | ||| Sbjct 3375 ACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATA 3434 Query 63552 CCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 || || || ||| |||| | ||| ||||||||| |||||||| | || Sbjct 3435 CCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGG 3493 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 ||||| | ||||||||| || || | ||| || || || |||||| ||| | || || Sbjct 3494 GGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATG 3553 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || || | |||| || | ||| | ||||||||| | || || | |||||| Sbjct 3554 ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAA 3613 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 | || ||||| | ||||| || || || || ||| || || || ||| ||| || Sbjct 3614 TAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAA 3673 Query 63791 AGTTTTAAAACCAAAATA 63808 ||||||||| |||||||| Sbjct 3674 AGTTTTAAATCCAAAATA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622888962223640