Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3673 179 1e-39 seq2267 150 5e-31 seq2873 136 1e-26 >seq3673 Length=8284 Score = 179 bits (198), Expect = 1e-39 Identities = 330/477 (69%), Gaps = 5/477 (1%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACTTCTG 111371 |||||||| | | |||||||| | || || ||| || ||| |||||||| | || Sbjct 6049 ATTTTCCATTATTAACAACAAAAAAATTAT-TTATAAGAGGTATTATCGAAGAATTATTG 6107 Query 111372 TGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGC-AGCAAAAAATGTAAAAATTTG 111430 |||||||| | || ||||||| |||| | ||| || |||||| |||| ||| || Sbjct 6108 TGGTTTATAAGAGGGGAAACAAATGGAAAT-ACTTTGTTAGAAAAAAACGTAAGAATATG 6166 Query 111431 GGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGG 111490 ||| | |||||| || | || ||| ||||| || | | || | | |||| Sbjct 6167 GGAAGCTAATGGAACAAGGGAATTTTTAGATAAAGAAAATTATTTC-ATAGAGAAGTTAA 6225 Query 111491 TGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCAT 111550 ||||||||| ||| |||| |||||||||||| | || |||||||| || || | | || Sbjct 6226 TGATCTCGGTCCAATTTATGGATTTCAATGGAGGCATTTTGGTGCTGAATATACAGATAT 6285 Query 111551 GCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 ||| || ||| | | ||| |||||||||| | ||| | || || |||||| Sbjct 6286 GCATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATATTATAAATTTAATTAA 6345 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || | || |||| | | || |||||| || |||||||||| ||| | || || | Sbjct 6346 AAATGATCCTACTTGTAGACGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATCA 6405 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||| | || || |||||| || | || || |||||||| ||||| | | || Sbjct 6406 AATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGACGGAAAATTATC 6465 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGC 111787 ||| |||||||| ||||| |||| | || ||||| ||||| || |||||||| Sbjct 6466 ATGTATTATGTATCAAAGATCTTGTGATTTAGGGCTTGGGGTTCCATTCAATATTGC 6522 >seq2267 Length=4651 Score = 150 bits (166), Expect = 5e-31 Identities = 579/902 (64%), Gaps = 18/902 (2%) Strand=Plus/Minus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| ||| || | || ||| || ||| || || ||| | | Sbjct 3697 TATGATTATTTTGGATTTAAAACTTTAGAACGATCATATTTATTACGAATTAATAATAAA 3638 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||||| || || ||| | |||||| | || | ||||| || ||| ||| Sbjct 3637 ATTATTGAACGTCCTCAACATTTATTAATGAGAGTGTCAATTGGAATTCATATAGATGAT 3578 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 |||| || | ||||||||| | | ||| ||| || |||| || || Sbjct 3577 CTTGAAAAAGCTTTAGAAACATATCA---TTTAATGTCTCAAAAATATTTCACACATGCT 3521 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || ||| | | ||| | ||||| | || || ||||| ||||| ||||| || Sbjct 3520 ACACCCACATTATTTAATTCAGGAACCCCACGACCGCAAATGTCATCTTGTTTTCTATTA 3461 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 ||||| ||||| || || ||||| ||||| ||| | || | |||||| | ||| Sbjct 3460 TCTATGAAATCAGATTCTATTGAAGGTATATTTGAAACATTAAAACAATGTGCTTTGATT 3401 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || | |||||||| || || || | | || || | | | ||||| ||| Sbjct 3400 AGTAAAACAGCAGGCGGCATAGGAGTTGCTGTACAAGATATAAGAGGTCAGAATTCTTAT 3341 Query 363739 ATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| | || || | || ||| || ||||| | ||||| ||| | | || ||| | | Sbjct 3340 ATTAGAGGAACTAATGGTATA-TCAAATGGTTTAGTTCCAATGTTAAGGGTTTTTAATGA 3282 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||| || ||||| || || || |||||||| || | ||||| | ||||| | ||| | Sbjct 3281 TACGGCAAGGTATGTAGATCAAGGTGGAGGGAAAAGAAAAGGATCTTTTGCAGTATATAT 3222 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGA 363917 ||||| ||| | ||||||||||| ||| | || | | ||||| || ||||| Sbjct 3221 AGAGCCATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGA 3162 Query 363918 GGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 ||||| | || || ||| | || ||||| ||||||| |||| |||||||| | Sbjct 3161 AGAATTAAGAGCTCGAGATTTATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAG 3102 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037 || | | | ||| || ||| | | | || || | |||||||||||| | || Sbjct 3101 AGTAAAAGAAAATAAAAACTGGACTTTAATGTGTCCTAATGAATGTCCAGGTTTAAGTGA 3042 Query 364038 TGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGGAGGGAAA---G 364092 ||||| ||||| | || | | ||||| ||| |||||| || | ||| Sbjct 3041 ATCTTGGGGAGACGAATTTGAAAAGTTATATAC--AAAATATGAA---GAAGAAAATTTA 2987 Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 | || ||| | | ||||| | |||||||||| || | | || ||||| Sbjct 2986 GGAAAAAAAACAGTCCTTGCACAAGATTTATGGTTTGCTATATTACAAAGTCAAATTGAA 2927 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 || || ||| |||||||| || |||||| | ||||| || || || || | | Sbjct 2926 ACTGGTGTACCATATATGTTATATAAAGATGCATGCAATTCTAAATCTAATCAAAAAAAT 2867 Query 364213 CTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 | || |||||| | || ||| ||||| || || |||||||||||| | || || Sbjct 2866 TTAGGAACAATTAAATGTAGTAACTTATGTTGTGAAATAATTGAATACACCTCACCTGAT 2807 Query 364273 GA 364274 || Sbjct 2806 GA 2805 >seq2873 Length=4471 Score = 136 bits (150), Expect = 1e-26 Identities = 302/445 (68%), Gaps = 21/445 (5%) Strand=Plus/Minus Query 22516 GAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGC--AA 22573 ||||| || || ||| |||| ||||||||||| |||||| | ||||||| || Sbjct 4470 GAAGGTATATTATTTAGTGGAAGTTTTTGTGCAATTTTTTGGTTTAAAAAACAAAATAAA 4411 Query 22574 TTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCG 22633 ||| | ||| |||| ||| ||||| ||||||||| ||||||| ||||| ||||| | Sbjct 4410 TTA--CATGGTTTAACATTTAGTAATGAATTAATTAGCAGAGATGAAGGTCTACATACTG 4353 Query 22634 ATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTAC 22693 ||||| || | | ||| | | || | ||||| | ||| | ||| ||| | Sbjct 4352 ATTTTAATTGCTTAATTTATAGTT-TATTAGAAA--ATAAATTACCAGAAGAAGTTGTTC 4296 Query 22694 TTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCA- 22752 |||| ||| | | ||||||||| | || | ||||||||| || | |||||| Sbjct 4295 AAAATATAGTTAAAGAAGCAGTTGAAGTAGAGAGATCATTTATTTGTGAATCTTTACCAT 4236 Query 22753 GTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGAT 22812 || | | | ||||| || ||| | | ||| | ||||||| |||||||||| ||| Sbjct 4235 GTGATT-TAATTGGAATGAATTCAAGACTTATGTCTCAATATATTGAATTTGTTGCTGAT 4177 Query 22813 CGTCTATTAATTTCACTCGGTTATGC-AAAG-----CATTATAACGTCGTTAATCCATTT 22866 | || || | | || | | | |||| |||| ||| ||||||||| Sbjct 4176 AGATTACTAGAATGTTTAGGGTGTTCTAAAGTTTTTCATTCTAAA------AATCCATTT 4123 Query 22867 GAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGT 22926 | |||||||| | || || | ||||||| || |||||||| ||||||||||||| Sbjct 4122 AATTGGATGGATTTAATATCTTTACAAGGAAAAACAAATTTCTTTGAAAAAAGAGTTGCA 4063 Query 22927 GAATACCAAAAAGCAGGTGTTATGG 22951 || || ||||| |||||||||||| Sbjct 4062 GATTATCAAAAGTCAGGTGTTATGG 4038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303228706548578