Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4931 87.8 2e-12 >seq4931 Length=1290 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/162 (73%), Gaps = 8/162 (5%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || ||||| ||| | ||||| | || || || | || Sbjct 1132 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1191 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || | || ||||||||| ||| || ||| |||| ||||| ||||| Sbjct 1192 CGATACTATTGAA--AATGTTAAAGCAAAAATTCAA-GATAAAAAAGGAATTCCCCCTGA 1248 Query 25115 CCAACAGCGGATTA--TTTTTGCCGGCAAACAATTAGAAGAT 25154 |||| | || ||||||| || ||||||||||||||| Sbjct 1249 CCAAACAAAAACTAATTTTTTGCTGGAAAACAATTAGAAGAT 1290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433288502017385