Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2873 154 2e-32 >seq2873 Length=4471 Score = 154 bits (170), Expect = 2e-32 Identities = 307/438 (70%), Gaps = 14/438 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| | ||||| || || ||||| ||||||||||||||||||| ||||||| Sbjct 4039 CATAACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTG 4098 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| ||| || | | | | |||||| || | | | || ||||| | | Sbjct 4099 TAAAGATATTAAATCCATCCAATTAAATGGATTTTTAGAATGA-AAAACTTTAGAACACC 4157 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC-ACAA 92965 | | | | | | |||||||||||| |||||||| || || |||||||| || || || Sbjct 4158 CTAAACATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACAT-AAGTCTTGAA 4216 Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAAT-CTTTCTCGATTACAA 93023 |||||||| | | | ||| |||| || || || |||| | |||| | | ||| Sbjct 4217 TTCATTCCAATTA-AATCACATGGTAAAGATTC-ACAAATAAATGATCTCTCTACTTCAA 4274 Query 93024 CGGCTTCTTTCAAGATTTCTATTAC-TCTACTATTTGGTGGTTTTTGTACGACATAATTG 93082 | |||||||| | || | | || || || | |||| ||| | | | | || | Sbjct 4275 CTGCTTCTTTAACTATATTTTGAACAACTTCT-TCTGGTAATTTATTTTCTAATAAACTA 4333 Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCT 93141 || |||||||| ||| || ||||||| |||||| |||| || | || || ||||| || Sbjct 4334 TAAATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTC-TGCTAATTAATTCATTACT 4392 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||||||||||| |||| | |||| || | |||||| |||| | |||||| || Sbjct 4393 AAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCC 4452 Query 93202 AGaaaaaaaTATACCTTC 93219 | ||| ||||||||||| Sbjct 4453 ACTAAATAATATACCTTC 4470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556808740475960