Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq4409 91.5 3e-13 seq2794 86.0 1e-11 >seq4409 Length=7677 Score = 91.5 bits (100), Expect = 3e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 142059 GTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCGC 142117 |||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2578 GTGGCGCAATTGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAATCCCGC 2519 Query 142118 CAGAG 142122 | ||| Sbjct 2518 CGGAG 2514 >seq2794 Length=14026 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 142510 TTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| Sbjct 4965 TTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCAGGGGTTCGAGCCCC 4909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027738307859839