Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09]
7,479 sequences; 17,954,629 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4931 93.3 4e-14
seq2267 84.2 2e-11
>seq4931
Length=1290
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/158 (74%), Gaps = 2/158 (1%)
Strand=Plus/Minus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATA-TCAATCGTTGCT-GGTCCGGCGGAATGCCTTCT 45242
||| || ||||||||||| || | | | | | ||| | |||| || ||||| |||| |
Sbjct 1290 ATCTTCTAATTGTTTTCCAGCAAAAAATTAGTTTTTGTTTGGTCAGGGGGAATTCCTTTT 1231
Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302
||||||||||||||| ||| | ||| | || ||||| | || || || |||||
Sbjct 1230 TTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTG 1171
Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| ||||| ||||||| ||||||||||| ||||||||
Sbjct 1170 ATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 1133
>seq2267
Length=4651
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659
||| | ||||| || || || ||| | || ||||| || ||||| ||| | |||
Sbjct 2935 CAAATTGAAACTGGTGTACCATATATGTTATATAAAGATGCATGCAATTCTAAATCTAAT 2876
Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719
|| | || || |||||||| ||||||||||| | || | ||||| || ||||||| |
Sbjct 2875 CAAAAAAATTTAGGAACAATTAAATGTAGTAACTTATGTTGTGAAATAATTGAATACACC 2816
Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATT 123758
| ||| |||| || || |||||||||||||| |||
Sbjct 2815 TCACCTGATGAAGTAGCTGTTTGTAATTTGGCTTCAATT 2777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451960943350840
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |