Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4931 87.8 4e-12 >seq4931 Length=1290 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGA-TAAGTCGTTGTT-GGTCTGGAGGAATGCCTTCT 195042 |||||| | || || || || || | | ||| ||||| |||| || ||||| |||| | Sbjct 1290 ATCTTCTAATTGTTTTCCAGCAAAAAATTAGTTTTTGTTTGGTCAGGGGGAATTCCTTTT 1231 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || |||||||||||| || || || ||||| || || || ||| || ||||| || Sbjct 1230 TTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTG 1171 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || ||||| || || |||||||| || | |||||||| Sbjct 1170 ATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCATTT 1131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109375284272393